Prupe.3G294900_v2.0.a1

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011596
Physical Location & Seq
Forward (+)
26281440 .. 26285957
4518 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G294900.1

Sequence Viewer

Length: 945 bp
ATGAGCATGTTAGCTACTGCTCAGTTATACGCACAGAGATGGAGCACGTCAGCTGGTGCTTCCGAAATACAGAGCATCAGCAGCTCAACTGGTGCTTCCGAGTACCCTTTTTTATATACCGGTGTGAATCAAAGAGAAGATGTAAGAATCTCATTAGACTCAATTCCCAGGGATAGGTTCAAAATCTGTATAGATTATGGAGAGAGAACTCGAGTCTTCCATTGGATTCCTGGTGAGCATCTTCCAGTAGAACTTCCTTGTGCTACTACATACCACCTCCTTGCTGAGAGGAGTTTCTATGTCCCTATGCGTGATGTCAAGCAATTTTCATCAAGGCCTAAATGGACGCATGTCTTGGCTTATCATCTTTCCAAGATCGGTGTCCCACAAGGTGCGCAGCCAGCTCTTATTGTAAGAGTACTTGATTACATTGAGGAGGCCGACAACGACAGCTTTGAGTTGCCTATTCTTGTGCATATTGTGGATGGCACTTATCACTATCTGAAGTCGAACCACGACAACGACATCCTTGATAGGGTTATGAGGGAATCCTCGGAAGCATACAGGGCCATGCTTATTCCTGCAGCTCAATCATCCATTCAGGGCTTGGAGAATGTGAGGCTTGATGATCCTACTTTGGCCCCGTCGTCTGCATGTATTATTTGTATGGAGGGCCTCCTCCTTGATCATCATGATGATCATCACTCTGATAATATTAATGTCGTCCCTGCTTCACAAGATGAAGATGATGACCATGATCAAGATCAAGGTCAAGGGGTTGATCGTCATCGTCCGCCAATGACGATCAAACGCTTGCCCTGCTTACACCAGTTTCATGAAGATTGCATCGTCCCGTGGCTGCAGATCAATCACTTGTGTCCCCTGTGCCGATACCCGCTGGAAGTGCGCGAGTCATCAAAACCCAAACGAAGGAGATTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

315

Amino Acids

35.87

Weight (kDa)

5.67

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 396
AccII CGCG 1 cut(s) 909
AciI CCGC 2 cut(s) 794, 896
AclWI GGATC 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 524
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 104, 420
AfiI CCNNNNNNNGG 3 cut(s) 174, 535, 930
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 2 cut(s) 167, 229
AluBI AGCT 6 cut(s) 14, 53, 84, 404, 453, 587
AluI AGCT 6 cut(s) 14, 53, 84, 404, 453, 587
Alw21I GWGCWC 1 cut(s) 47
AlwI GGATC 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 5 cut(s) 335, 438, 567, 639, 673
ApeKI GCWGC 4 cut(s) 81, 397, 584, 859
AseI ATTAAT 1 cut(s) 717
AsiGI ACCGGT 1 cut(s) 119
AspLEI GCGC 2 cut(s) 397, 909
AspS9I GGNCC 3 cut(s) 567, 640, 673
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 4 cut(s) 93, 409, 596, 846
BccI CCATC 2 cut(s) 33, 479
BciT130I CCWGG 2 cut(s) 169, 231
BclI TGATCA 3 cut(s) 685, 697, 757
BfmI CTRYAG 2 cut(s) 582, 860
BisI GCNGC 4 cut(s) 82, 398, 585, 860
BlsI GCNGC 4 cut(s) 83, 399, 586, 861
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 2 cut(s) 169, 231
BmeT110I CYCGRG 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 567, 640, 673
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 2 cut(s) 169, 231
BmsI GCATC 3 cut(s) 84, 247, 855
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 208
BsaBI GATNNNNATC 3 cut(s) 699, 762, 786
BsaJI CCNNGG 4 cut(s) 167, 168, 552, 854
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 535, 930
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 94, 245, 829
Bse8I GATNNNNATC 3 cut(s) 699, 762, 786
BseBI CCWGG 2 cut(s) 169, 231
BseDI CCNNGG 4 cut(s) 167, 168, 552, 854
BseGI GGATG 3 cut(s) 490, 525, 593
BseJI GATNNNNATC 3 cut(s) 699, 762, 786
BseLI CCNNNNNNNGG 3 cut(s) 174, 535, 930
BseMII CTCAG 2 cut(s) 35, 276
BseNI ACTGG 3 cut(s) 94, 245, 829
BseRI GAGGAG 3 cut(s) 304, 449, 668
BseXI GCAGC 4 cut(s) 93, 409, 596, 846
Bsh1236I CGCG 1 cut(s) 909
BshFI GGCC 5 cut(s) 337, 440, 569, 641, 675
BshTI ACCGGT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 5 cut(s) 287, 368, 710, 836, 864
BslI CCNNNNNNNGG 3 cut(s) 174, 535, 930
BsmFI GGGAC 5 cut(s) 287, 368, 710, 836, 864
BsnI GGCC 5 cut(s) 337, 440, 569, 641, 675
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
BspACI CCGC 2 cut(s) 794, 896
BspANI GGCC 5 cut(s) 337, 440, 569, 641, 675
BspCNI CTCAG 2 cut(s) 34, 277
BspFNI CGCG 1 cut(s) 909
BspHI TCATGA 3 cut(s) 691, 835, 941
BspLI GGNNCC 1 cut(s) 642
BspMAI CTGCAG 2 cut(s) 586, 864
BspPI GGATC 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 94, 245, 829
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 4 cut(s) 167, 168, 552, 854
BssMI GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
Bst2UI CCWGG 2 cut(s) 169, 231
BstC8I GCNNGC 2 cut(s) 402, 815
BstDEI CTNAG 2 cut(s) 21, 285
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 3 cut(s) 490, 525, 593
BstFNI CGCG 1 cut(s) 909
BstHHI GCGC 2 cut(s) 397, 909
BstKTI GATC 9 cut(s) 378, 631, 688, 700, 760, 766, 784, 807, 867
BstMBI GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
BstMWI GCNNNNNNNGC 5 cut(s) 81, 401, 566, 819, 904
BstNI CCWGG 2 cut(s) 169, 231
BstNSI RCATGY 3 cut(s) 10, 353, 657
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 167, 229
BstSFI CTRYAG 2 cut(s) 582, 860
BstUI CGCG 1 cut(s) 909
BstV1I GCAGC 4 cut(s) 93, 409, 596, 846
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 5 cut(s) 337, 440, 569, 641, 675
BtgI CCRYGG 1 cut(s) 854
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 3 cut(s) 490, 525, 593
Cac8I GCNNGC 2 cut(s) 402, 815
CciI TCATGA 3 cut(s) 691, 835, 941
CfoI GCGC 2 cut(s) 397, 909
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 567, 640, 673
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 103, 419
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 8 cut(s) 7, 350, 571, 654, 692, 755, 836, 942
CviQI GTAC 2 cut(s) 103, 419
DdeI CTNAG 2 cut(s) 21, 285
DpnI GATC 9 cut(s) 377, 630, 687, 699, 759, 765, 783, 806, 866
DpnII GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
DraIII CACNNNGTG 1 cut(s) 392
EciI GGCGGA 1 cut(s) 783
Eco147I AGGCCT 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 167, 229
FaeI CATG 8 cut(s) 10, 353, 574, 657, 695, 758, 839, 945
FaqI GGGAC 5 cut(s) 287, 368, 710, 836, 864
FatI CATG 8 cut(s) 6, 349, 570, 653, 691, 754, 835, 941
FauI CCCGC 1 cut(s) 903
FbaI TGATCA 3 cut(s) 685, 697, 757
Fnu4HI GCNGC 4 cut(s) 82, 398, 585, 860
FokI GGATG 3 cut(s) 497, 512, 580
Fsp4HI GCNGC 4 cut(s) 82, 398, 585, 860
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 2 cut(s) 396, 908
GluI GCNGC 4 cut(s) 82, 398, 585, 860
HaeIII GGCC 5 cut(s) 337, 440, 569, 641, 675
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 397, 909
Hin1II CATG 8 cut(s) 10, 353, 574, 657, 695, 758, 839, 945
Hin6I GCGC 2 cut(s) 395, 907
HinP1I GCGC 2 cut(s) 395, 907
HinfI GANTC 7 cut(s) 127, 147, 158, 213, 226, 548, 911
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 5 cut(s) 64, 100, 504, 556, 709
Hpy188III TCNNGA 4 cut(s) 692, 761, 836, 942
Hpy99I CGWCG 1 cut(s) 649
HpyAV CCTTC 1 cut(s) 924
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 475, 584, 653, 846, 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 401, 566, 819, 904
HpyF3I CTNAG 2 cut(s) 21, 285
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 8 cut(s) 10, 353, 574, 657, 695, 758, 839, 945
HspAI GCGC 2 cut(s) 395, 907
Ksp22I TGATCA 3 cut(s) 685, 697, 757
Kzo9I GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 4 cut(s) 93, 409, 596, 846
LweI GCATC 3 cut(s) 84, 247, 855
MaeII ACGT 1 cut(s) 47
MalI GATC 9 cut(s) 377, 630, 687, 699, 759, 765, 783, 806, 866
MboI GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
MboII GAAGA 5 cut(s) 149, 208, 233, 755, 851
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 162, 323
MlyI GAGTC 3 cut(s) 152, 222, 920
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 2 cut(s) 37, 693
MspA1I CMGCKG 2 cut(s) 53, 898
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 169, 231
MvaI CCWGG 2 cut(s) 169, 231
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 5 cut(s) 81, 401, 566, 819, 904
NdeII GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
NlaIII CATG 8 cut(s) 10, 353, 574, 657, 695, 758, 839, 945
NlaIV GGNNCC 1 cut(s) 642
NsbI TGCGCA 1 cut(s) 396
NspI RCATGY 3 cut(s) 10, 353, 657
PaeR7I CTCGAG 1 cut(s) 210
PagI TCATGA 3 cut(s) 691, 835, 941
PasI CCCWGGG 1 cut(s) 168
PceI AGGCCT 1 cut(s) 337
PfeI GAWTC 4 cut(s) 127, 147, 226, 548
PinAI ACCGGT 1 cut(s) 119
PkrI GCNGC 4 cut(s) 83, 399, 586, 861
PleI GAGTC 3 cut(s) 152, 221, 919
PpsI GAGTC 3 cut(s) 152, 221, 919
PshAI GACNNNNGTC 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 167, 229
PspGI CCWGG 2 cut(s) 167, 229
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 3 cut(s) 567, 640, 673
PspXI VCTCGAGB 1 cut(s) 210
PstI CTGCAG 2 cut(s) 586, 864
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 104, 420
RsaNI GTAC 2 cut(s) 103, 419
RseI CAYNNNNRTG 2 cut(s) 37, 693
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 4 cut(s) 82, 398, 585, 860
Sau3AI GATC 9 cut(s) 375, 628, 685, 697, 757, 763, 781, 804, 864
Sau96I GGNCC 3 cut(s) 567, 640, 673
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 3 cut(s) 152, 222, 920
ScrFI CCNGG 2 cut(s) 169, 231
SduI GDGCHC 1 cut(s) 47
SfaNI GCATC 3 cut(s) 84, 247, 855
SfcI CTRYAG 2 cut(s) 582, 860
Sfr274I CTCGAG 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 37, 693
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 2 cut(s) 162, 323
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 794, 896
SspI AATATT 1 cut(s) 715
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 167, 229
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 211, 509
TasI AATT 2 cut(s) 162, 323
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 4 cut(s) 127, 147, 226, 548
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TseI GCWGC 4 cut(s) 81, 397, 584, 859
TspDTI ATGAA 4 cut(s) 318, 756, 824, 852
VspI ATTAAT 1 cut(s) 717
XceI RCATGY 3 cut(s) 10, 353, 657
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 604
XhoI CTCGAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.