Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Forward (+)

63169832 .. 63170560

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGATATCTTACTTTATTCCATGTTTCGCAGCAACACAGACCCTACCCGATCTGCGCCGTTCCGATCACATTCCACTTCTACAAGTATAACGGATACCAACGTGAGATTGATCCTCCGCGAGACCTTAGTACTGTTTATATTAGCCGAATAACTTTTCAGTACTTACATGTACTTAGAGTCCATCCCTCATCCAATAGGACTGCGGATCTACGGGATCAGATTGCTACGCTCCTCTCCGACTCTATACGTGTCACAGAAGAGGACCAGTCAACTATAATTGAAAAGATATTTCAGGTGCTTGCCCCGGACCCCGAGCTTTGTATTTTTGTTGATGTGGTTGAAGTGACTCTGCAGATAGCGGATGACATTGACGCGGTTATTGCAACGGAGTCCTTAAGAACATATATTCCCAAGCTTATTCCGGCAACTAAATCATCTATTGAAGGTTTGGAGAAAGTAGGGCTTGATAGCTTGGAAATCAAATCTAGTATTGAACTGACACCATCTTGTGTTATTTGTATGGAGGACCTTGATTACTCTGCAGAAGAAGGAGAGGGGGTAGTTGATCCTGATCATAAACGTCATGGGATCCTGATCACTCGCATGCCATGTTTGCACTATTATCATGAAGATTGCATTGTTCGTTGGCTGGAGATCAATCACAGGTGTCCCATTTGCCGATACCCAATGCCAACTGAAAACCCAAACCCAAACCCAACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

242

Amino Acids

27.84

Weight (kDa)

5.15

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	170 - 228	7.8e-09	Ring finger domain
zf-rbx1	PF12678	170 - 228	2.8e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	202 - 227	5.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	121, 377
AciI	CCGC	4 cut(s)	119, 206, 362, 377
AclWI	GGATC	6 cut(s)	107, 216, 225, 563, 586, 599
AfaI	GTAC	3 cut(s)	133, 164, 174
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	169, 250
AgsI	TTSAA	4 cut(s)	284, 344, 446, 497
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	319, 418, 474
AluI	AGCT	3 cut(s)	319, 418, 474
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	6 cut(s)	107, 216, 225, 563, 586, 599
Ama87I	CYCGRG	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	265, 310, 529
AsuC2I	CCSGG	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	265, 310, 529
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BamHI	GGATCC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	192, 514
BceAI	ACGGC	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	89
BclI	TGATCA	2 cut(s)	574, 597
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	353, 543
BfrI	CTTAAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmcAI	AGTACT	2 cut(s)	133, 164
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	265, 310, 529
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	3 cut(s)	265, 310, 529
BmiI	GGNNCC	2 cut(s)	312, 593
BmrFI	CCNGG	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	2 cut(s)	573, 596
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bse1I	ACTGG	1 cut(s)	268
Bse8I	GATNNNNATC	2 cut(s)	573, 596
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	184, 191, 370
BseJI	GATNNNNATC	2 cut(s)	573, 596
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	121, 377
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	308, 425
BslFI	GGGAC	1 cut(s)	657
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	657
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	119, 206, 362, 377
BspFNI	CGCG	2 cut(s)	121, 377
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	312, 593
BspMAI	CTGCAG	2 cut(s)	357, 547
BspPI	GGATC	6 cut(s)	107, 216, 225, 563, 586, 599
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	303, 608
BstDEI	CTNAG	2 cut(s)	128, 176
BstF5I	GGATG	3 cut(s)	184, 191, 370
BstFNI	CGCG	2 cut(s)	121, 377
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 616
BstNSI	RCATGY	2 cut(s)	173, 610
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	353, 543
BstUI	CGCG	2 cut(s)	121, 377
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	208, 591
BstYI	RGATCY	2 cut(s)	208, 591
BsuI	GTATCC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	184, 191, 370
Cac8I	GCNNGC	2 cut(s)	303, 608
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	265, 310, 529
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	132, 163, 173
CviAII	CATG	6 cut(s)	23, 170, 587, 607, 612, 629
CviJI	RGCY	6 cut(s)	147, 319, 418, 466, 474, 652
CviKI_1	RGCY	6 cut(s)	147, 319, 418, 466, 474, 652
CviQI	GTAC	3 cut(s)	132, 163, 173
DdeI	CTNAG	2 cut(s)	128, 176
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	265, 310, 529
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	8
FaeI	CATG	6 cut(s)	26, 173, 590, 610, 615, 632
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	6 cut(s)	22, 169, 586, 606, 611, 628
FbaI	TGATCA	2 cut(s)	574, 597
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	171, 178, 377
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	674
HapII	CCGG	2 cut(s)	308, 425
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	6 cut(s)	26, 173, 590, 610, 615, 632
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	180, 242, 349, 392
HpaII	CCGG	2 cut(s)	308, 425
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	66, 222, 241
Hpy188III	TCNNGA	3 cut(s)	572, 595, 629
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	440, 545
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	3 cut(s)	103, 250, 583
HpyCH4V	TGCA	5 cut(s)	355, 386, 545, 619, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 616
HpyF3I	CTNAG	2 cut(s)	128, 176
HpySE526I	ACGT	3 cut(s)	103, 250, 583
Hsp92II	CATG	6 cut(s)	26, 173, 590, 610, 615, 632
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	574, 597
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	281, 281, 321, 438, 585, 608, 638, 652
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	103, 250, 583
MaeIII	GTNAC	2 cut(s)	253, 346
MboII	GAAGA	3 cut(s)	272, 560, 644
MflI	RGATCY	2 cut(s)	208, 591
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	4 cut(s)	189, 236, 343, 401
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	126, 199, 245, 256, 520, 550
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	605
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	308, 425
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	121, 377
MwoI	GCNNNNNNNGC	2 cut(s)	383, 616
NciI	CCSGG	1 cut(s)	308
NlaIII	CATG	6 cut(s)	26, 173, 590, 610, 615, 632
NlaIV	GGNNCC	2 cut(s)	312, 593
NmuCI	GTSAC	2 cut(s)	253, 346
NspI	RCATGY	2 cut(s)	173, 610
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	628
PciI	ACATGT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	4 cut(s)	188, 236, 343, 400
PpsI	GAGTC	4 cut(s)	188, 236, 343, 400
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	529
PscI	ACATGT	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	312, 593
PspPI	GGNCC	3 cut(s)	265, 310, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	357, 547
PsuI	RGATCY	2 cut(s)	208, 591
RsaI	GTAC	3 cut(s)	133, 164, 174
RsaNI	GTAC	3 cut(s)	132, 163, 173
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	32
Sau96I	GGNCC	3 cut(s)	265, 310, 529
ScaI	AGTACT	2 cut(s)	133, 164
SchI	GAGTC	4 cut(s)	189, 236, 343, 401
ScrFI	CCNGG	1 cut(s)	308
SfcI	CTRYAG	2 cut(s)	353, 543
SinI	GGWCC	3 cut(s)	265, 310, 529
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	119, 206, 362, 377
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	3 cut(s)	106, 253, 586
TasI	AATT	1 cut(s)	279
TatI	WGTACW	3 cut(s)	131, 162, 172
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseFI	GTSAC	2 cut(s)	253, 346
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	253, 346
TspDTI	ATGAA	1 cut(s)	645
TspGWI	ACGGA	2 cut(s)	108, 404
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	265, 310, 529
XceI	RCATGY	2 cut(s)	173, 610
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	2 cut(s)	133, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.