FvH4_7g26671

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011596
Physical Location & Seq
Forward (+)
20107202 .. 20108913
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26671.t1

Sequence Viewer

Length: 786 bp
ATGAGATTTGTTACTTTGAGCGAAACTGAGCAAGAAATCGAATACGACGTCCTAACCGATGCAGACATTATTCGGATCAAATTCAAGTTATACAAGTTTACCGCAAGCCAACGTGAGATTGATGATCCAGGAGACACTAGTACTTGGAATATTTCGCAAAGAACTCTTTTCTATAATCGTGTATTAGAATTGTATCCCATACACAATAGGACTACGATTCTACGGGATCGTCTTGCTAATTATCTTTCCAACTCTATGATTATCACAGAAGATGACAAATCAGAAGCTATTGAAAAAGTATTTAAGGAGCTTGACGATCACATCCCAGGGATGGCTATTGTTGTTACTGTAATAGAAGTTACTCTGCACATACGGGATGGGAACGAGGATGATGATATCATTGAGAGGGTCACGACGGAGTCTTTGGAAGCATTTGCCCCCAAGCTTATTCCGGCAACTAAATCGTCTATTCAAGGTTTGGAGAAAGTAGGGGTTGATAGTTTGGAAATAAAATCTACTGGGGAACTGACACCATCGTGTGTTATTTGTATGGAAAAACTAGATTACTCTGATGATGACGATGAACCAGATCAAGAAGAGGGGATAGTTGATCACCCTGCTGATCATAAAGCAGGTAATGGTGGATTGTGGACCGTGATCGCTCGCATGCCATGTTTACACTATTTTCATGAAGATTGCATTGTTCATTGGCTGGAGATCAATCACTGGTGTCCCGTCTGCCGATACACAATGCCAACCGTAGAAGCGAGTGAGCAGCAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

262

Amino Acids

29.89

Weight (kDa)

4.52

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 221 - 248 1.6e-07 Ring finger domain
zf-C3HC4_2 PF13923 223 - 247 6.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 623
AciI CCGC 1 cut(s) 102
AclWI GGATC 3 cut(s) 83, 119, 234
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 85, 293, 473
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 2 cut(s) 127, 325
AleI CACNNNNGTG 1 cut(s) 535
AluBI AGCT 3 cut(s) 287, 310, 445
AluI AGCT 3 cut(s) 287, 310, 445
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 3 cut(s) 83, 119, 234
ApeKI GCWGC 2 cut(s) 775, 778
ApoI RAATTY 1 cut(s) 80
ArsI GACNNNNNNTTYG 4 cut(s) 33, 65, 406, 438
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 1 cut(s) 651
BccI CCATC 3 cut(s) 325, 371, 541
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 2 cut(s) 129, 327
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 2 cut(s) 610, 622
BcoDI GTCTC 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 2 cut(s) 138, 560
BfuAI ACCTGC 1 cut(s) 623
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 2 cut(s) 776, 779
BlsI GCNGC 2 cut(s) 777, 780
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 129, 327
Bme18I GGWCC 1 cut(s) 651
BmgT120I GGNCC 1 cut(s) 651
BmrFI CCNGG 2 cut(s) 129, 327
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 325, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 523, 731
BseBI CCWGG 2 cut(s) 129, 327
BseDI CCNNGG 2 cut(s) 325, 326
BseGI GGATG 4 cut(s) 321, 336, 382, 394
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 523, 731
BsgI GTGCAG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 717
Bsp143I GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 3 cut(s) 83, 119, 234
BsrI ACTGG 2 cut(s) 523, 731
BssECI CCNNGG 2 cut(s) 325, 326
BssMI GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 129, 327
Bst4CI ACNGT 3 cut(s) 349, 655, 760
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 106, 664, 668
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 321, 336, 382, 394
BstKTI GATC 9 cut(s) 78, 127, 229, 319, 592, 613, 625, 660, 720
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
BstNI CCWGG 2 cut(s) 129, 327
BstNSI RCATGY 1 cut(s) 670
BstSCI CCNGG 2 cut(s) 127, 325
BsuI GTATCC 1 cut(s) 204
BtsCI GGATG 4 cut(s) 321, 336, 382, 394
BtsIMutI CAGTG 1 cut(s) 724
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 106, 664, 668
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 651
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 667, 672, 689, 783
CviJI RGCY 7 cut(s) 108, 287, 310, 335, 445, 712, 781
CviKI_1 RGCY 7 cut(s) 108, 287, 310, 335, 445, 712, 781
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 27
DpnI GATC 9 cut(s) 77, 126, 228, 318, 591, 612, 624, 659, 719
DpnII GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 127, 325
EcoRV GATATC 1 cut(s) 397
FaeI CATG 4 cut(s) 670, 675, 692, 786
FaqI GGGAC 1 cut(s) 717
FatI CATG 4 cut(s) 666, 671, 688, 782
FbaI TGATCA 2 cut(s) 610, 622
Fnu4HI GCNGC 2 cut(s) 776, 779
FokI GGATG 4 cut(s) 308, 343, 389, 401
Fsp4HI GCNGC 2 cut(s) 776, 779
FspBI CTAG 2 cut(s) 138, 560
GluI GCNGC 2 cut(s) 776, 779
GsuI CTGGAG 1 cut(s) 734
HapII CCGG 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 670, 675, 692, 786
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 2 cut(s) 217, 419
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 3 cut(s) 99, 651, 677
Hpy188I TCNGA 3 cut(s) 75, 283, 571
Hpy188III TCNNGA 3 cut(s) 412, 593, 689
Hpy8I GTNNAC 3 cut(s) 99, 651, 677
Hpy99I CGWCG 2 cut(s) 50, 418
HpyCH4III ACNGT 3 cut(s) 349, 655, 760
HpyCH4IV ACGT 2 cut(s) 48, 112
HpyCH4V TGCA 3 cut(s) 62, 367, 699
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 48, 112
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 670, 675, 692, 786
Ksp22I TGATCA 2 cut(s) 610, 622
Kzo9I GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
LmnI GCTCC 1 cut(s) 307
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 138, 560
MaeII ACGT 2 cut(s) 48, 112
MaeIII GTNAC 4 cut(s) 10, 343, 358, 409
MalI GATC 9 cut(s) 77, 126, 228, 318, 591, 612, 624, 659, 719
MboI GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
MboII GAAGA 3 cut(s) 281, 608, 704
MluCI AATT 3 cut(s) 80, 188, 238
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 379, 399, 592
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 535
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 129, 327
MvaI CCWGG 2 cut(s) 129, 327
NdeII GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
NlaIII CATG 4 cut(s) 670, 675, 692, 786
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 670
OliI CACNNNNGTG 1 cut(s) 535
PaeI GCATGC 1 cut(s) 670
PagI TCATGA 1 cut(s) 688
PasI CCCWGGG 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 54
PfeI GAWTC 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 777, 780
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 127, 325
PspGI CCWGG 2 cut(s) 127, 325
PspPI GGNCC 1 cut(s) 651
PsyI GACNNNGTC 1 cut(s) 418
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 535
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 776, 779
Sau3AI GATC 9 cut(s) 75, 124, 226, 316, 589, 610, 622, 657, 717
Sau96I GGNCC 1 cut(s) 651
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 129, 327
SetI ASST 7 cut(s) 51, 115, 289, 312, 447, 478, 637
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 535
SpeI ACTAGT 1 cut(s) 137
SphI GCATGC 1 cut(s) 670
Sse9I AATT 3 cut(s) 80, 188, 238
SsiI CCGC 1 cut(s) 102
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 138, 560
StyD4I CCNGG 2 cut(s) 127, 325
TaaI ACNGT 3 cut(s) 349, 655, 760
TaiI ACGT 2 cut(s) 51, 115
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 80, 188, 238
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 775, 778
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 4 cut(s) 597, 677, 695, 705
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 731
Tth111I GACNNNGTC 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 670
XspI CTAG 2 cut(s) 138, 560
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.