RchiOBHm_Chr1g0375041

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011596
Physical Location & Seq
Forward (+)
62630276 .. 62633568
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59878

Sequence Viewer

Length: 198 bp
ATGCTTCTATTTGTGTCAATTTGTGTGGAGGAGATACATGAACTGTTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCATTGGTGTTCGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAAAAGCAAGGAATTCAAGTGCAAGTTATTCCAGGTACAATAATGAGTCAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

65

Amino Acids

7.11

Weight (kDa)

4.59

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 10 - 59 2.8e-12 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 92, 105
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 65, 71
AluI AGCT 2 cut(s) 65, 71
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 2 cut(s) 92, 105
ApoI RAATTY 1 cut(s) 153
BamHI GGATCC 1 cut(s) 97
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
BseBI CCWGG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 44, 140
BsmAI GTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 2 cut(s) 92, 105
BssMI GATC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 45, 76
BstDEI CTNAG 1 cut(s) 50
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Csp6I GTAC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 65, 71
CviKI_1 RGCY 2 cut(s) 65, 71
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 41
FaiI YATR 1 cut(s) 39
FatI CATG 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 87
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 45, 76
HpyCH4V TGCA 2 cut(s) 142, 163
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 51, 159, 186
MaeIII GTNAC 1 cut(s) 45
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MflI RGATCY 1 cut(s) 97
MluCI AATT 2 cut(s) 18, 153
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 22, 86, 118
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 99
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 174
SetI ASST 3 cut(s) 67, 73, 178
SgeI CNNG 7 cut(s) 50, 78, 161, 170, 176, 185, 186
Sse9I AATT 2 cut(s) 18, 153
SspI AATATT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 45, 76
TasI AATT 2 cut(s) 18, 153
TspDTI ATGAA 1 cut(s) 54
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.