Prupe.3G297500_v2.0.a1

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011596
Physical Location & Seq
Forward (+)
26390557 .. 26396553
5997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G297500.1

Sequence Viewer

Length: 387 bp
ATGGGGCAATCCTCGGAAGCATACAGGGCCAAGCTTATTCCTGCAGCTCAATCATCCATTCAGGGCTTGGAGAATGTGAGGCTTGATGATCCTACTTTGGCCCCGTCGTCCGCATGTATTATTTGTATGGAGGGCCTCCTCCTTGTTCATCACTCTGATAATATTAATGTCGTCCCTGCTTCTCAAGATGATCATCATGATGAAGATCAAGGTCAAGGGGTTGATCATCGCCATCCACCAATGACGATCAAACGCTTGCCCTGCTTACACCAATTTCATGAAGATTGCATCGTCCCGTGGCTGCAGACCAATCACTTGTGTCCCCTGTGCCGATACCCGCTGGAAGTGCGCGAGTCATCAAAACCCAAACGAAGGAGATTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

129

Amino Acids

14.45

Weight (kDa)

6.28

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 351
AciI CCGC 2 cut(s) 111, 338
AclWI GGATC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 372
AluBI AGCT 2 cut(s) 34, 47
AluI AGCT 2 cut(s) 34, 47
AlwI GGATC 1 cut(s) 83
AoxI GGCC 3 cut(s) 27, 99, 133
ApeKI GCWGC 2 cut(s) 44, 301
AseI ATTAAT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 27, 100, 133
BbvI GCAGC 2 cut(s) 56, 288
BccI CCATC 1 cut(s) 240
BclI TGATCA 2 cut(s) 190, 223
BfmI CTRYAG 2 cut(s) 42, 302
BisI GCNGC 2 cut(s) 45, 302
BlsI GCNGC 2 cut(s) 46, 303
BmgT120I GGNCC 3 cut(s) 27, 100, 133
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 192, 204
BsaJI CCNNGG 2 cut(s) 12, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse8I GATNNNNATC 2 cut(s) 192, 204
BseDI CCNNGG 2 cut(s) 12, 296
BseGI GGATG 2 cut(s) 53, 232
BseJI GATNNNNATC 2 cut(s) 192, 204
BseLI CCNNNNNNNGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 56, 288
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 3 cut(s) 29, 101, 135
BslFI GGGAC 3 cut(s) 158, 278, 306
BslI CCNNNNNNNGG 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 158, 278, 306
BsnI GGCC 3 cut(s) 29, 101, 135
Bsp143I GATC 5 cut(s) 88, 190, 205, 223, 246
BspACI CCGC 2 cut(s) 111, 338
BspANI GGCC 3 cut(s) 29, 101, 135
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 3 cut(s) 196, 277, 383
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 2 cut(s) 46, 306
BspPI GGATC 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 12, 296
BssMI GATC 5 cut(s) 88, 190, 205, 223, 246
BstC8I GCNNGC 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 53, 232
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 5 cut(s) 91, 193, 208, 226, 249
BstMBI GATC 5 cut(s) 88, 190, 205, 223, 246
BstMWI GCNNNNNNNGC 3 cut(s) 26, 261, 346
BstNSI RCATGY 1 cut(s) 117
BstSFI CTRYAG 2 cut(s) 42, 302
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 56, 288
BsuRI GGCC 3 cut(s) 29, 101, 135
BtgI CCRYGG 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 53, 232
Cac8I GCNNGC 1 cut(s) 257
CciI TCATGA 3 cut(s) 196, 277, 383
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 27, 100, 133
CviAII CATG 4 cut(s) 114, 197, 278, 384
CviJI RGCY 8 cut(s) 29, 34, 47, 66, 82, 101, 135, 301
CviKI_1 RGCY 8 cut(s) 29, 34, 47, 66, 82, 101, 135, 301
DpnI GATC 5 cut(s) 90, 192, 207, 225, 248
DpnII GATC 5 cut(s) 88, 190, 205, 223, 246
EcoO109I RGGNCCY 1 cut(s) 133
FaeI CATG 4 cut(s) 117, 200, 281, 387
FaiI YATR 6 cut(s) 22, 115, 128, 198, 279, 385
FaqI GGGAC 3 cut(s) 158, 278, 306
FatI CATG 4 cut(s) 113, 196, 277, 383
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 2 cut(s) 190, 223
Fnu4HI GCNGC 2 cut(s) 45, 302
FokI GGATG 2 cut(s) 40, 219
Fsp4HI GCNGC 2 cut(s) 45, 302
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 45, 302
HaeIII GGCC 3 cut(s) 29, 101, 135
HhaI GCGC 1 cut(s) 351
Hin1II CATG 4 cut(s) 117, 200, 281, 387
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 16, 157
Hpy188III TCNNGA 4 cut(s) 185, 197, 278, 384
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 44, 288, 304
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 261, 346
Hsp92II CATG 4 cut(s) 117, 200, 281, 387
HspAI GCGC 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 190, 223
Kzo9I GATC 5 cut(s) 88, 190, 205, 223, 246
LpnPI CCDG 7 cut(s) 10, 47, 54, 189, 274, 326, 338
Lsp1109I GCAGC 2 cut(s) 56, 288
LweI GCATC 1 cut(s) 297
MalI GATC 5 cut(s) 90, 192, 207, 225, 248
MboI GATC 5 cut(s) 88, 190, 205, 223, 246
MboII GAAGA 2 cut(s) 215, 293
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 5 cut(s) 22, 72, 124, 146, 149
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 340
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 26, 261, 346
NdeII GATC 5 cut(s) 88, 190, 205, 223, 246
NlaIII CATG 4 cut(s) 117, 200, 281, 387
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 117
PagI TCATGA 3 cut(s) 196, 277, 383
PkrI GCNGC 2 cut(s) 46, 303
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 27, 100, 133
PstI CTGCAG 2 cut(s) 46, 306
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 45, 302
Sau3AI GATC 5 cut(s) 88, 190, 205, 223, 246
Sau96I GGNCC 3 cut(s) 27, 100, 133
SchI GAGTC 1 cut(s) 362
SetI ASST 3 cut(s) 36, 49, 214
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 42, 302
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 1 cut(s) 272
SsiI CCGC 2 cut(s) 111, 338
SspI AATATT 1 cut(s) 163
TasI AATT 1 cut(s) 272
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 2 cut(s) 44, 301
TspDTI ATGAA 4 cut(s) 137, 216, 266, 294
VspI ATTAAT 1 cut(s) 165
XceI RCATGY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.