RLG00000022832

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011596
Physical Location & Seq
Forward (+)
12889902 .. 12891968
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022832

Sequence Viewer

Length: 315 bp
ATGAAGAAGGGATCCACAGCTCAGTGTGTTTGCTTGGTTGATGAGTCTGGTAATTGGACAATGCGTCCATGTCTCTCTAGTGCTGTGAAGCTTCACCCAAAGGAGGAGATACATGAACTGCTACTGAGTTTTGCTAAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCGCTGGTGTTTGGAAGGGGTGGAGAGGAGATGCATTTTTTGCAAAAGCAAGGAATTCAAGTGCAAGTTATTCCAGGTATCACTGCTGCTTCTGGGATAGCAGCAGAGCTAGGGATCCCATTAACTCACAGAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

105

Amino Acids

11.03

Weight (kDa)

8.56

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 32 - 103 4.6e-21 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 6 cut(s) 6, 19, 167, 180, 283, 296
AcsI RAATTY 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 233
AhdI GACNNNNNGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 5 cut(s) 20, 91, 140, 146, 283
AluI AGCT 5 cut(s) 20, 91, 140, 146, 283
Alw26I GTCTC 2 cut(s) 77, 151
AlwI GGATC 6 cut(s) 6, 19, 167, 180, 283, 296
ApeKI GCWGC 2 cut(s) 260, 275
ApoI RAATTY 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 86
BamHI GGATCC 3 cut(s) 11, 172, 288
BbvI GCAGC 2 cut(s) 247, 287
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 77, 151
BfaI CTAG 3 cut(s) 78, 284, 313
BisI GCNGC 2 cut(s) 261, 276
BlsI GCNGC 2 cut(s) 262, 277
Bme1390I CCNGG 1 cut(s) 249
BmeRI GACNNNNNGTC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 13, 174, 290
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 35, 116
BseRI GAGGAG 2 cut(s) 119, 215
BseXI GCAGC 2 cut(s) 247, 287
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 77, 151
Bsp143I GATC 3 cut(s) 11, 172, 288
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 34, 117
BspLI GGNNCC 3 cut(s) 13, 174, 290
BspPI GGATC 6 cut(s) 6, 19, 167, 180, 283, 296
BssMI GATC 3 cut(s) 11, 172, 288
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 21, 125
BstKTI GATC 3 cut(s) 14, 175, 291
BstMAI GTCTC 2 cut(s) 77, 151
BstMBI GATC 3 cut(s) 11, 172, 288
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 247, 287
BstX2I RGATCY 3 cut(s) 11, 172, 288
BstYI RGATCY 3 cut(s) 11, 172, 288
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 29, 255
CseI GACGC 1 cut(s) 53
CviAII CATG 2 cut(s) 69, 113
CviJI RGCY 5 cut(s) 20, 91, 140, 146, 283
CviKI_1 RGCY 5 cut(s) 20, 91, 140, 146, 283
DdeI CTNAG 2 cut(s) 21, 125
DpnI GATC 3 cut(s) 13, 174, 290
DpnII GATC 3 cut(s) 11, 172, 288
DriI GACNNNNNGTC 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 210
FaeI CATG 2 cut(s) 72, 116
FaiI YATR 2 cut(s) 70, 114
FatI CATG 2 cut(s) 68, 112
Fnu4HI GCNGC 2 cut(s) 261, 276
Fsp4HI GCNGC 2 cut(s) 261, 276
FspBI CTAG 3 cut(s) 78, 284, 313
GluI GCNGC 2 cut(s) 261, 276
GsuI CTGGAG 1 cut(s) 162
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 72, 116
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 208, 217, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 21, 125
Hsp92II CATG 2 cut(s) 72, 116
Kzo9I GATC 3 cut(s) 11, 172, 288
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 33, 126, 164, 234, 252, 261
Lsp1109I GCAGC 2 cut(s) 247, 287
LweI GCATC 1 cut(s) 195
MaeI CTAG 3 cut(s) 78, 284, 313
MalI GATC 3 cut(s) 13, 174, 290
MboI GATC 3 cut(s) 11, 172, 288
MboII GAAGA 1 cut(s) 16
MflI RGATCY 3 cut(s) 11, 172, 288
MluCI AATT 2 cut(s) 52, 228
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 4 cut(s) 97, 161, 193, 299
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 3 cut(s) 11, 172, 288
NlaIII CATG 2 cut(s) 72, 116
NlaIV GGNNCC 3 cut(s) 13, 174, 290
NsiI ATGCAT 1 cut(s) 210
PkrI GCNGC 2 cut(s) 262, 277
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 13, 174, 290
PsuI RGATCY 3 cut(s) 11, 172, 288
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 261, 276
Sau3AI GATC 3 cut(s) 11, 172, 288
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 22, 93, 142, 148, 253, 285
SfaNI GCATC 1 cut(s) 195
Sse9I AATT 2 cut(s) 52, 228
SsiI CCGC 1 cut(s) 176
SspMI CTAG 3 cut(s) 78, 284, 313
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 52, 228
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 2 cut(s) 29, 262
TseI GCWGC 2 cut(s) 260, 275
TspDTI ATGAA 2 cut(s) 17, 129
TspRI CASTG 2 cut(s) 29, 262
XapI RAATTY 1 cut(s) 228
XspI CTAG 3 cut(s) 78, 284, 313
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.