Rmu_sc0004112.1_g000017

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004112.1
OG0011596
Physical Location & Seq
Reverse (-)
70445 .. 72553
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004112.1_g000017.1.cds

Sequence Viewer

Length: 1125 bp
atggttgcaatggtggaacgaggttttgttgcagacataaggtggctcaacgagggaggaggacaacttagtctatctgggttccataacttggagtcgacgacacagttgttccgcgcttggtggtgggctgaaacgacaatgactgaacagcaaggtttgatcttctcgacgaggctgcaggaagcgttattatctggccggtatttgggcgggtttttggcagagctggttgtcggcctacggaagtatggtagcgagagaaagcaggggaggagcgggttggccaggtggtatgctgttctacattctttaggcatgtgttggtgttggttgatgccaacattggcctcttttggggttggatctgggtttggtggctaccagaagccatggtgtgatttttgtctgggctggggttggtggtggcactatcctagggctagataccggagatttggtttcgagacaagcaaccttgcaagatcccaacttcctgtggcggttccccggaagcttgagtcaaatttgaagggcaggaaagcggataagttgagtgtctgtagcccagaagaatatgcgaatgtggttagagttgggctcgtatcggttcatgatgagcacccaaacataagtgatgaggcattcaaggtgcttaacggggtcgtctgcccggagctgccggttctagtggactttgtggatgtgactgagcgcatcttattgggtactgccgacgatgttcatgatatggtttcaagggagttgatggaaacgtaccggccaaattttattccggcaactaaatcatcaattgagggtctgcaaaaagtgagaattgaagatggtttggaattagaagctattactggacagatgccttcgtgtgttatttgtatgaagagccttgaaccaaggcgtagacgacgacaaggaaaaggaatcaagaagaagaagaagaagaagagacccaccatgattactattacccgcttgccttgctttcaccactttcatggagatcgcattgttaagtggctagatatcagccacccgtgtccaatgtgcccaatgtgccgatacccaatgccaacagcagaattggaccagccatcaaaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

374

Amino Acids

42.65

Weight (kDa)

9.23

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 279
AccI GTMKAC 2 cut(s) 98, 922
AccII CGCG 1 cut(s) 117
AciI CCGC 6 cut(s) 115, 213, 279, 503, 545, 991
AclWI GGATC 2 cut(s) 373, 480
AcoI YGGCCR 3 cut(s) 199, 285, 782
AcsI RAATTY 2 cut(s) 526, 787
AfaI GTAC 2 cut(s) 730, 779
AfiI CCNNNNNNNGG 3 cut(s) 91, 208, 357
AgsI TTSAA 5 cut(s) 532, 649, 759, 842, 911
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 229, 517, 679, 863
AluI AGCT 4 cut(s) 229, 517, 679, 863
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 461, 961
AlwI GGATC 2 cut(s) 373, 480
AoxI GGCC 5 cut(s) 199, 238, 285, 348, 782
ApeKI GCWGC 2 cut(s) 178, 679
ApoI RAATTY 2 cut(s) 526, 787
AspA2I CCTAGG 1 cut(s) 437
AspLEI GCGC 2 cut(s) 119, 717
AspS9I GGNCC 1 cut(s) 1105
AsuC2I CCSGG 2 cut(s) 511, 674
AsuHPI GGTGA 1 cut(s) 998
AvaII GGWCC 1 cut(s) 1105
AvrII CCTAGG 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 1070
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 165, 666
BccI CCATC 3 cut(s) 763, 839, 1120
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 2 cut(s) 511, 674
BcoDI GTCTC 2 cut(s) 461, 961
BfaI CTAG 4 cut(s) 438, 444, 689, 1040
BfmI CTRYAG 2 cut(s) 179, 562
BisI GCNGC 2 cut(s) 179, 680
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 2 cut(s) 180, 681
Bme1390I CCNGG 3 cut(s) 289, 511, 674
Bme18I GGWCC 1 cut(s) 1105
BmgT120I GGNCC 1 cut(s) 1105
BmiI GGNNCC 2 cut(s) 83, 507
BmrFI CCNGG 3 cut(s) 289, 511, 674
BmsI GCATC 3 cut(s) 327, 726, 867
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 511, 674
BsaI GGTCTC 1 cut(s) 961
BsaJI CCNNGG 4 cut(s) 392, 437, 509, 914
BsaWI WCCGGW 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 208, 357
Bse118I RCCGGY 3 cut(s) 201, 682, 780
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 4 cut(s) 392, 437, 509, 914
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 3 cut(s) 91, 208, 357
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 2 cut(s) 72, 289
BseSI GKGCMC 1 cut(s) 1070
BseXI GCAGC 2 cut(s) 165, 666
BseYI CCCAGC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 5 cut(s) 201, 240, 287, 350, 784
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 7 cut(s) 202, 451, 511, 674, 683, 781, 797
BslI CCNNNNNNNGG 3 cut(s) 91, 208, 357
BsmAI GTCTC 2 cut(s) 461, 961
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 5 cut(s) 201, 240, 287, 350, 784
Bso31I GGTCTC 1 cut(s) 961
Bsp1286I GDGCHC 3 cut(s) 603, 624, 1070
Bsp143I GATC 4 cut(s) 162, 365, 485, 1021
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 6 cut(s) 115, 213, 279, 503, 545, 991
BspANI GGCC 5 cut(s) 201, 240, 287, 350, 784
BspCNI CTCAG 1 cut(s) 703
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 2 cut(s) 613, 745
BspLI GGNNCC 2 cut(s) 83, 507
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 373, 480
BspQI GCTCTTC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 961
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 3 cut(s) 201, 682, 780
BsrI ACTGG 1 cut(s) 874
BssAI RCCGGY 3 cut(s) 201, 682, 780
BssECI CCNNGG 4 cut(s) 392, 437, 509, 914
BssMI GATC 4 cut(s) 162, 365, 485, 1021
BssT1I CCWWGG 3 cut(s) 392, 437, 914
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 2 cut(s) 896, 959
BstC8I GCNNGC 1 cut(s) 995
BstDEI CTNAG 2 cut(s) 68, 711
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 119, 717
BstKTI GATC 4 cut(s) 165, 368, 488, 1024
BstMAI GTCTC 2 cut(s) 461, 961
BstMBI GATC 4 cut(s) 162, 365, 485, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 999, 1074
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 3 cut(s) 287, 509, 672
BstSFI CTRYAG 2 cut(s) 179, 562
BstSLI GKGCMC 1 cut(s) 1070
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 165, 666
BstX2I RGATCY 2 cut(s) 365, 485
BstXI CCANNNNNNTGG 1 cut(s) 1016
BstYI RGATCY 2 cut(s) 365, 485
BsuRI GGCC 5 cut(s) 201, 240, 287, 350, 784
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 1 cut(s) 995
CciI TCATGA 2 cut(s) 613, 745
CfoI GCGC 2 cut(s) 119, 717
Cfr10I RCCGGY 3 cut(s) 201, 682, 780
Cfr13I GGNCC 1 cut(s) 1105
Csp6I GTAC 2 cut(s) 729, 778
CviAII CATG 6 cut(s) 319, 393, 614, 746, 976, 1016
CviQI GTAC 2 cut(s) 729, 778
DdeI CTNAG 2 cut(s) 68, 711
DpnI GATC 4 cut(s) 164, 367, 487, 1023
DpnII GATC 4 cut(s) 162, 365, 485, 1021
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
EaeI YGGCCR 3 cut(s) 199, 285, 782
Eam1104I CTCTTC 2 cut(s) 896, 959
EarI CTCTTC 2 cut(s) 896, 959
Eco130I CCWWGG 3 cut(s) 392, 437, 914
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 961
Eco32I GATATC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 1 cut(s) 1045
EcoT14I CCWWGG 3 cut(s) 392, 437, 914
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 3 cut(s) 392, 437, 914
FaeI CATG 6 cut(s) 322, 396, 617, 749, 979, 1019
FatI CATG 6 cut(s) 318, 392, 613, 745, 975, 1015
FauI CCCGC 3 cut(s) 206, 272, 998
FblI GTMKAC 2 cut(s) 98, 922
Fnu4HI GCNGC 2 cut(s) 179, 680
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 179, 680
FspBI CTAG 4 cut(s) 438, 444, 689, 1040
GlaI GCGC 2 cut(s) 118, 716
GluI GCNGC 2 cut(s) 179, 680
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 5 cut(s) 201, 240, 287, 350, 784
HapII CCGG 7 cut(s) 202, 451, 511, 674, 683, 781, 797
HhaI GCGC 2 cut(s) 119, 717
Hin1II CATG 6 cut(s) 322, 396, 617, 749, 979, 1019
Hin6I GCGC 2 cut(s) 117, 715
HinP1I GCGC 2 cut(s) 117, 715
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 95, 521, 942
HpaII CCGG 7 cut(s) 202, 451, 511, 674, 683, 781, 797
HphI GGTGA 1 cut(s) 998
Hpy166II GTNNAC 3 cut(s) 99, 694, 923
Hpy188III TCNNGA 5 cut(s) 169, 466, 614, 746, 946
Hpy8I GTNNAC 3 cut(s) 99, 694, 923
Hpy99I CGWCG 4 cut(s) 103, 175, 740, 930
HpyAV CCTTC 2 cut(s) 526, 891
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 5 cut(s) 8, 32, 181, 482, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 999, 1074
HpyF3I CTNAG 2 cut(s) 68, 711
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 6 cut(s) 322, 396, 617, 749, 979, 1019
HspAI GCGC 2 cut(s) 117, 715
Kzo9I GATC 4 cut(s) 162, 365, 485, 1021
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 2 cut(s) 276, 676
Lsp1109I GCAGC 2 cut(s) 165, 666
LweI GCATC 3 cut(s) 327, 726, 867
MaeI CTAG 4 cut(s) 438, 444, 689, 1040
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 1 cut(s) 706
MalI GATC 4 cut(s) 164, 367, 487, 1023
MbiI CCGCTC 1 cut(s) 279
MboI GATC 4 cut(s) 162, 365, 485, 1021
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 2 cut(s) 365, 485
MhlI GDGCHC 3 cut(s) 603, 624, 1070
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 6 cut(s) 526, 787, 813, 837, 854, 1100
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 2 cut(s) 104, 530
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 9 cut(s) 14, 46, 50, 53, 168, 267, 361, 634, 811
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 657, 1032
MslI CAYNNNNRTG 1 cut(s) 1014
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 7 cut(s) 202, 451, 511, 674, 683, 781, 797
MspR9I CCNGG 3 cut(s) 289, 511, 674
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 999, 1074
NciI CCSGG 2 cut(s) 511, 674
NcoI CCATGG 1 cut(s) 392
NdeII GATC 4 cut(s) 162, 365, 485, 1021
NlaIII CATG 6 cut(s) 322, 396, 617, 749, 979, 1019
NlaIV GGNNCC 2 cut(s) 83, 507
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 322
PagI TCATGA 2 cut(s) 613, 745
PciSI GCTCTTC 1 cut(s) 896
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 942
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 2 cut(s) 180, 681
PleI GAGTC 2 cut(s) 103, 529
PpsI GAGTC 2 cut(s) 103, 529
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 83, 507
PspPI GGNCC 1 cut(s) 1105
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 2 cut(s) 365, 485
RsaI GTAC 2 cut(s) 730, 779
RsaNI GTAC 2 cut(s) 729, 778
RseI CAYNNNNRTG 1 cut(s) 1014
SalI GTCGAC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 896
SaqAI TTAA 2 cut(s) 657, 1032
SatI GCNGC 2 cut(s) 179, 680
Sau3AI GATC 4 cut(s) 162, 365, 485, 1021
Sau96I GGNCC 1 cut(s) 1105
SchI GAGTC 2 cut(s) 104, 530
ScrFI CCNGG 3 cut(s) 289, 511, 674
SduI GDGCHC 3 cut(s) 603, 624, 1070
SfaNI GCATC 3 cut(s) 327, 726, 867
SfcI CTRYAG 2 cut(s) 179, 562
SinI GGWCC 1 cut(s) 1105
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 6 cut(s) 526, 787, 813, 837, 854, 1100
SsiI CCGC 6 cut(s) 115, 213, 279, 503, 545, 991
SspMI CTAG 4 cut(s) 438, 444, 689, 1040
StyD4I CCNGG 3 cut(s) 287, 509, 672
StyI CCWWGG 3 cut(s) 392, 437, 914
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 1 cut(s) 779
TaqI TCGA 3 cut(s) 98, 170, 465
TasI AATT 6 cut(s) 526, 787, 813, 837, 854, 1100
TfiI GAWTC 1 cut(s) 942
Tru1I TTAA 2 cut(s) 657, 1032
Tru9I TTAA 2 cut(s) 657, 1032
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 2 cut(s) 178, 679
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 602, 734, 914, 1004
TspGWI ACGGA 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 1105
XapI RAATTY 2 cut(s) 526, 787
XceI RCATGY 1 cut(s) 322
XmaJI CCTAGG 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 98, 922
XspI CTAG 4 cut(s) 438, 444, 689, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.