Rh2DG446000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011596
Physical Location & Seq
Forward (+)
64761024 .. 64771963
10940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG446000.1

Sequence Viewer

Length: 531 bp
ATGGAGAGGCGTTATTATGCGTTGCAAGCGAAGCAATTAACGGAGCCGTGCTCAGAAAGAATAAACTGGCTTCAAATCATATTACGGCACTTGAAGCGGATCCGGAGCAGCCGTGAGATTAATGATCCGGTTGTTAATGATGAAGTAACCATCATATCTGCCAAACGCTGGTTCTTGTACTTCCCTAATATCAAGATACTATCCTATTACTCAACCAAACAAAGAAGAAAAGTTGAATCCTATAGGAGCAAGTGTAGAAAGAGAATTGGTGAGTCTCTTTCACGCATGGGTGTCCCGGAAGATGAGCACCCAAACGTATGTGAAGAGGCATTCAAGGTGCTTGACGTGGTCGTCTGCCCGGAGCTGCCTGTTCGAGTGGACTTTGTGGATGTGACTGAGCGCATCTTATTGGGTACTGCCGACGATGTTCATGATATGGTTTCGAGGGAGTCGATGGAAACGTACCGGCCAAATTTTATTCCGGCAACTAAATCATCAATTGAGGGTCTGGAAAAAATTTCAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

176

Amino Acids

20.71

Weight (kDa)

7.66

Isoelectric Point (pI)

68.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 1 cut(s) 97
AclWI GGATC 3 cut(s) 94, 107, 119
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 2 cut(s) 472, 516
AfaI GTAC 3 cut(s) 179, 415, 464
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 74, 94, 236, 334
AjiI CACGTC 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw21I GWGCWC 2 cut(s) 53, 309
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 3 cut(s) 94, 107, 119
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 108, 364
ApoI RAATTY 2 cut(s) 472, 516
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 402
AsuC2I CCSGG 2 cut(s) 296, 359
AsuHPI GGTGA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 53, 309
BbvI GCAGC 2 cut(s) 120, 351
BccI CCATC 2 cut(s) 158, 448
BceAI ACGGC 3 cut(s) 31, 96, 101
BcnI CCSGG 2 cut(s) 296, 359
BcoDI GTCTC 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 2 cut(s) 109, 365
BlsI GCNGC 2 cut(s) 110, 366
Bme1390I CCNGG 2 cut(s) 296, 359
BmgBI CACGTC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 45, 101
BmrFI CCNGG 2 cut(s) 296, 359
BmsI GCATC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpuMI CCSGG 2 cut(s) 296, 359
BsaWI WCCGGW 2 cut(s) 102, 127
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 102
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 66, 387
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 120, 351
BshFI GGCC 1 cut(s) 469
BsiHKAI GWGCWC 2 cut(s) 53, 309
BsiSI CCGG 6 cut(s) 103, 128, 296, 359, 466, 482
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 53, 309
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 99, 124
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 65, 388
BspEI TCCGGA 1 cut(s) 102
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 45, 101
BspPI GGATC 3 cut(s) 94, 107, 119
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 465
BssMI GATC 2 cut(s) 99, 124
Bst6I CTCTTC 2 cut(s) 318, 519
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 52, 396
BstF5I GGATG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 2 cut(s) 102, 127
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 99, 124
BstMWI GCNNNNNNNGC 3 cut(s) 26, 31, 94
BstSCI CCNGG 2 cut(s) 294, 357
BstSFI CTRYAG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 120, 351
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 469
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 27
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 465
Csp6I GTAC 3 cut(s) 178, 414, 463
CviAII CATG 2 cut(s) 286, 431
CviJI RGCY 5 cut(s) 46, 70, 111, 364, 469
CviKI_1 RGCY 5 cut(s) 46, 70, 111, 364, 469
CviQI GTAC 3 cut(s) 178, 414, 463
DdeI CTNAG 2 cut(s) 52, 396
DpnI GATC 2 cut(s) 101, 126
DpnII GATC 2 cut(s) 99, 124
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 318, 519
EarI CTCTTC 2 cut(s) 318, 519
FaeI CATG 2 cut(s) 289, 434
FaiI YATR 8 cut(s) 18, 80, 155, 243, 287, 319, 432, 437
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 285, 430
Fnu4HI GCNGC 2 cut(s) 109, 365
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 2 cut(s) 109, 365
GlaI GCGC 1 cut(s) 401
GluI GCNGC 2 cut(s) 109, 365
HaeIII GGCC 1 cut(s) 469
HapII CCGG 6 cut(s) 103, 128, 296, 359, 466, 482
HhaI GCGC 1 cut(s) 402
Hin1II CATG 2 cut(s) 289, 434
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HinfI GANTC 3 cut(s) 236, 272, 449
HpaII CCGG 6 cut(s) 103, 128, 296, 359, 466, 482
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 55, 523
Hpy188III TCNNGA 4 cut(s) 103, 193, 431, 509
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 425
HpyCH4IV ACGT 3 cut(s) 315, 345, 461
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 31, 94
HpyF3I CTNAG 2 cut(s) 52, 396
HpySE526I ACGT 3 cut(s) 315, 345, 461
Hsp92II CATG 2 cut(s) 289, 434
HspAI GCGC 1 cut(s) 400
Kpn2I TCCGGA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 99, 124
LmnI GCTCC 4 cut(s) 43, 105, 246, 361
Lsp1109I GCAGC 2 cut(s) 120, 351
LweI GCATC 1 cut(s) 411
MaeII ACGT 3 cut(s) 315, 345, 461
MaeIII GTNAC 2 cut(s) 145, 391
MalI GATC 2 cut(s) 101, 126
MboI GATC 2 cut(s) 99, 124
MboII GAAGA 3 cut(s) 237, 311, 335
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 53, 309
MluCI AATT 5 cut(s) 35, 264, 472, 498, 516
MlyI GAGTC 2 cut(s) 281, 458
MnlI CCTC 3 cut(s) 319, 438, 496
MroI TCCGGA 1 cut(s) 102
MseI TTAA 3 cut(s) 38, 120, 135
MspI CCGG 6 cut(s) 103, 128, 296, 359, 466, 482
MspR9I CCNGG 2 cut(s) 296, 359
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 26, 31, 94
NciI CCSGG 2 cut(s) 296, 359
NdeII GATC 2 cut(s) 99, 124
NlaIII CATG 2 cut(s) 289, 434
NlaIV GGNNCC 2 cut(s) 45, 101
NmuCI GTSAC 1 cut(s) 391
PagI TCATGA 1 cut(s) 430
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 458
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 2 cut(s) 110, 366
PleI GAGTC 2 cut(s) 280, 457
PpsI GAGTC 2 cut(s) 280, 457
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 45, 101
PsuI RGATCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 3 cut(s) 179, 415, 464
RsaNI GTAC 3 cut(s) 178, 414, 463
SaqAI TTAA 3 cut(s) 38, 120, 135
SatI GCNGC 2 cut(s) 109, 365
Sau3AI GATC 2 cut(s) 99, 124
SchI GAGTC 2 cut(s) 281, 458
ScrFI CCNGG 2 cut(s) 296, 359
SduI GDGCHC 2 cut(s) 53, 309
SetI ASST 5 cut(s) 318, 339, 348, 366, 464
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 241
Sse9I AATT 5 cut(s) 35, 264, 472, 498, 516
SsiI CCGC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 294, 357
TaiI ACGT 3 cut(s) 318, 348, 464
TaqI TCGA 3 cut(s) 373, 443, 452
TasI AATT 5 cut(s) 35, 264, 472, 498, 516
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 38, 120, 135
Tru9I TTAA 3 cut(s) 38, 120, 135
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 108, 364
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 156, 419
TspGWI ACGGA 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 168
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 2 cut(s) 472, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.