Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Forward (+)

83374586 .. 83377119

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAAGGGATCCACAGCTCAGTGTGTTTGCTTGGTTGATGAGTCTGGTAATTGGACAATGCGTCCATGTCTCTCTAGTGCTGTGAAGCTTCACCCAAAGGAGGAGATACATGAACTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCACCGGTGTTTGGAAGGGGTGGAGAGGAAATGCATTTTTTGCAAAAGCAAGGAATTCAAGTGCAAACAAAAGATGCTCGCTACGTAGAAAACCAACAGCAGAACATAGCTGATGCTATCGATCTACTCCCTCGACTTGCAACCTATTTCGTTGTTAACATAAGGATAAGTGATTTTGAGTTTACTCCAAAATTTGCAATATTGGATCTGTTAGACATCCCACTATATCATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

137

Amino Acids

15.19

Weight (kDa)

5.77

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	32 - 80	1e-07	Tetrapyrrole (Corrin/Porphyrin) Methylases
MINDY_DUB	PF04424	71 - 136	2.1e-09	MINDY deubiquitinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	6, 19, 167, 180, 387
AcsI	RAATTY	2 cut(s)	228, 365
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	103, 185
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	233
AhdI	GACNNNNNGTC	1 cut(s)	63
AluBI	AGCT	5 cut(s)	20, 91, 140, 146, 284
AluI	AGCT	5 cut(s)	20, 91, 140, 146, 284
Alw26I	GTCTC	2 cut(s)	77, 151
AlwI	GGATC	5 cut(s)	6, 19, 167, 180, 387
ApoI	RAATTY	2 cut(s)	228, 365
AsiGI	ACCGGT	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	86
BamHI	GGATCC	2 cut(s)	11, 172
BcoDI	GTCTC	2 cut(s)	77, 151
BfaI	CTAG	2 cut(s)	78, 409
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	13, 174
BmsI	GCATC	2 cut(s)	238, 277
BpmI	CTGGAG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 185
Bse118I	RCCGGY	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	103, 185
BseMII	CTCAG	2 cut(s)	35, 116
BseRI	GAGGAG	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	103, 185
BsmAI	GTCTC	2 cut(s)	77, 151
Bsp143I	GATC	4 cut(s)	11, 172, 295, 379
BspCNI	CTCAG	2 cut(s)	34, 117
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	13, 174
BspPI	GGATC	5 cut(s)	6, 19, 167, 180, 387
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	4 cut(s)	11, 172, 295, 379
Bst4CI	ACNGT	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	21, 125
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	4 cut(s)	14, 175, 298, 382
BstMAI	GTCTC	2 cut(s)	77, 151
BstMBI	GATC	4 cut(s)	11, 172, 295, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	259
BstX2I	RGATCY	3 cut(s)	11, 172, 379
BstYI	RGATCY	3 cut(s)	11, 172, 379
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	3 cut(s)	69, 113, 404
CviJI	RGCY	6 cut(s)	20, 91, 140, 146, 284, 408
CviKI_1	RGCY	6 cut(s)	20, 91, 140, 146, 284, 408
DdeI	CTNAG	2 cut(s)	21, 125
DpnI	GATC	4 cut(s)	13, 174, 297, 381
DpnII	GATC	4 cut(s)	11, 172, 295, 379
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	210
FaeI	CATG	3 cut(s)	72, 116, 407
FaiI	YATR	6 cut(s)	70, 114, 281, 335, 400, 405
FatI	CATG	3 cut(s)	68, 112, 403
FokI	GGATG	1 cut(s)	377
FspBI	CTAG	2 cut(s)	78, 409
GsuI	CTGGAG	1 cut(s)	162
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	72, 116, 407
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	44
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	331, 357
Hpy8I	GTNNAC	2 cut(s)	331, 357
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	208, 217, 238, 314, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	21, 125
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	72, 116, 407
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	11, 172, 295, 379
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	33, 126, 192
LweI	GCATC	2 cut(s)	238, 277
MaeI	CTAG	2 cut(s)	78, 409
MaeII	ACGT	1 cut(s)	258
MalI	GATC	4 cut(s)	13, 174, 297, 381
MboI	GATC	4 cut(s)	11, 172, 295, 379
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	3 cut(s)	11, 172, 379
MluCI	AATT	3 cut(s)	52, 228, 365
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	97, 161, 193, 315
Mph1103I	ATGCAT	1 cut(s)	210
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	4 cut(s)	11, 172, 295, 379
NlaIII	CATG	3 cut(s)	72, 116, 407
NlaIV	GGNNCC	2 cut(s)	13, 174
NsiI	ATGCAT	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	178
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	13, 174
PsuI	RGATCY	3 cut(s)	11, 172, 379
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	4 cut(s)	11, 172, 295, 379
SchI	GAGTC	1 cut(s)	53
SetI	ASST	7 cut(s)	22, 93, 142, 148, 261, 286, 320
SfaNI	GCATC	2 cut(s)	238, 277
SgrAI	CRCCGGYG	1 cut(s)	178
SnaBI	TACGTA	1 cut(s)	259
Sse9I	AATT	3 cut(s)	52, 228, 365
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	2 cut(s)	78, 409
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	294, 307
TasI	AATT	3 cut(s)	52, 228, 365
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	17, 129
TspRI	CASTG	1 cut(s)	29
XapI	RAATTY	2 cut(s)	228, 365
XspI	CTAG	2 cut(s)	78, 409
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.