Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Forward (+)

8788306 .. 8789397

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTCGCTTTCTCCTTTCATTTGTCTTTGCTTCTCTCTTAGCCCTAGCTACTGTCCATGAAACTCAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAGCACCCCTGGTGGAGTCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCGACTGATTTCATCTGGAACCTCTTTAAGGAAACTACATGCAGCTGCAGAGAGAAGGGACACACCGCGCATAAGCTTGACCTACCGGCAGCAAATCTCAAAAACGACTTCAATTGGGTACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAGGCTCCTACCGGAGTGGTAGAAGGGATTGCTGAGTTTGTGACCTTGAAGTCTGGTTTTATACCCCCCTCGTTTGCAAAACCTGGTGATGGTAACAGTTGGGACGAGGGTTACAGCGTAACTGCACGGTTCCTGGATTACTGCAATGGTCTTAAAGACGGGTTTGTGGCAGAACTTAACAAGAAGATGATAGATGGTTACAGTAACGATTTCTTTAACCAGTTGCTCGGGAAGACAGTCGATCAGCTGTGGACTGAATATAAAGCCAAATATGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

205

Amino Acids

23.14

Weight (kDa)

6.21

Isoelectric Point (pI)

16.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 74	9.8e-06	Peptidase of plants and bacteria
BSP	PF04450	88 - 199	2.7e-40	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	385
AccII	CGCG	2 cut(s)	173, 239
AciI	CCGC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	80, 291
AfiI	CCNNNNNNNGG	2 cut(s)	199, 425
AgsI	TTSAA	2 cut(s)	283, 385
AjnI	CCWGG	3 cut(s)	109, 418, 468
AluBI	AGCT	6 cut(s)	50, 71, 136, 216, 247, 583
AluI	AGCT	6 cut(s)	50, 71, 136, 216, 247, 583
Alw26I	GTCTC	2 cut(s)	123, 162
Ama87I	CYCGRG	1 cut(s)	563
ApeKI	GCWGC	3 cut(s)	213, 216, 260
AspLEI	GCGC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	203, 225, 272
BccI	CCATC	2 cut(s)	419, 524
BciT130I	CCWGG	3 cut(s)	111, 420, 470
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	123, 162
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	3 cut(s)	214, 217, 261
BlsI	GCNGC	3 cut(s)	215, 218, 262
Bme1390I	CCNGG	4 cut(s)	95, 111, 420, 470
BmeT110I	CYCGRG	1 cut(s)	563
BmiI	GGNNCC	3 cut(s)	191, 342, 467
BmrFI	CCNGG	4 cut(s)	95, 111, 420, 470
BpiI	GAAGAC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 425
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	2 cut(s)	314, 487
BseBI	CCWGG	3 cut(s)	111, 420, 470
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	199, 425
BseMI	GCAATG	2 cut(s)	314, 487
BseMII	CTCAG	2 cut(s)	115, 360
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	203, 225, 272
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	173, 239
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	94, 257, 348
BslFI	GGGAC	2 cut(s)	243, 452
BslI	CCNNNNNNNGG	2 cut(s)	199, 425
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	2 cut(s)	243, 452
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	303, 577
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	114, 361
BspFNI	CGCG	2 cut(s)	173, 239
BspLI	GGNNCC	3 cut(s)	191, 342, 467
BspMAI	CTGCAG	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	314, 487
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	303, 577
Bst2UI	CCWGG	3 cut(s)	111, 420, 470
Bst4CI	ACNGT	5 cut(s)	55, 434, 465, 539, 574
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	40, 101, 369
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	173, 239
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	306, 580
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	2 cut(s)	303, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNI	CCWGG	3 cut(s)	111, 420, 470
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	4 cut(s)	93, 109, 418, 468
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	2 cut(s)	173, 239
BstV1I	GCAGC	3 cut(s)	203, 225, 272
BstV2I	GAAGAC	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	256
CseI	GACGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	79, 290
CviAII	CATG	3 cut(s)	59, 210, 299
CviQI	GTAC	2 cut(s)	79, 290
DdeI	CTNAG	3 cut(s)	40, 101, 369
DpnI	GATC	2 cut(s)	305, 579
DpnII	GATC	2 cut(s)	303, 577
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	109, 418, 468
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	3 cut(s)	62, 213, 302
FaiI	YATR	7 cut(s)	60, 211, 243, 300, 398, 597, 609
FaqI	GGGAC	2 cut(s)	243, 452
FatI	CATG	3 cut(s)	58, 209, 298
Fnu4HI	GCNGC	3 cut(s)	214, 217, 261
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	214, 217, 261
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	214, 217, 261
GsaI	CCCAGC	1 cut(s)	140
HapII	CCGG	3 cut(s)	94, 257, 348
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	62, 213, 302
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	3 cut(s)	94, 257, 348
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	145, 588
Hpy188III	TCNNGA	3 cut(s)	88, 187, 565
Hpy8I	GTNNAC	2 cut(s)	145, 588
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	220, 353
HpyCH4III	ACNGT	5 cut(s)	55, 434, 465, 539, 574
HpyCH4V	TGCA	7 cut(s)	213, 219, 319, 413, 461, 480, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	3 cut(s)	40, 101, 369
Hsp92II	CATG	3 cut(s)	62, 213, 302
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	303, 577
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	203, 225, 272
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	6 cut(s)	376, 428, 446, 454, 533, 539
MalI	GATC	2 cut(s)	305, 579
MboI	GATC	2 cut(s)	303, 577
MboII	GAAGA	2 cut(s)	532, 580
MfeI	CAATTG	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	203, 315, 415, 436
MseI	TTAA	4 cut(s)	198, 489, 513, 552
MspA1I	CMGCKG	2 cut(s)	216, 583
MspI	CCGG	3 cut(s)	94, 257, 348
MspR9I	CCNGG	4 cut(s)	95, 111, 420, 470
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	3 cut(s)	111, 420, 470
MvnI	CGCG	2 cut(s)	173, 239
MwoI	GCNNNNNNNGC	1 cut(s)	608
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	303, 577
NlaIII	CATG	3 cut(s)	62, 213, 302
NlaIV	GGNNCC	3 cut(s)	191, 342, 467
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	215, 218, 262
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	109, 418, 468
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	3 cut(s)	109, 418, 468
PspN4I	GGNNCC	3 cut(s)	191, 342, 467
PstI	CTGCAG	1 cut(s)	221
PvuII	CAGCTG	2 cut(s)	216, 583
RsaI	GTAC	2 cut(s)	80, 291
RsaNI	GTAC	2 cut(s)	79, 290
SaqAI	TTAA	4 cut(s)	198, 489, 513, 552
SatI	GCNGC	3 cut(s)	214, 217, 261
Sau3AI	GATC	2 cut(s)	303, 577
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	95, 111, 420, 470
SduI	GDGCHC	1 cut(s)	100
SexAI	ACCWGGT	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	4 cut(s)	93, 109, 418, 468
TaaI	ACNGT	5 cut(s)	55, 434, 465, 539, 574
TaqI	TCGA	2 cut(s)	87, 576
TasI	AATT	1 cut(s)	283
TatI	WGTACW	1 cut(s)	78
Tru1I	TTAA	4 cut(s)	198, 489, 513, 552
Tru9I	TTAA	4 cut(s)	198, 489, 513, 552
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	213, 216, 260
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	9, 75, 172
TspGWI	ACGGA	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	197
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.