Rw1G035360

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011596
Physical Location & Seq
Forward (+)
63172205 .. 63173992
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035360.1

Sequence Viewer

Length: 324 bp
ATGGGCTCGCGCTCGTCGTCGGCTTTGTCAAGCTCGAGAACCGCCACTCCAAGGCCAGGTCACAATTGGCTCAATTCTCACTTGACGAAGATCTGGCCGTATGTAAATGAGGAGGAGATACATGAACGGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCACTAGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAAAAGCAAGTAATTCAAGTGCAAGTTATTCCAGGTATCACTGCTGCTTCTGGGATAGCAGCAGAGCTAGGGATCCCATTAACTCACAGAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

107

Amino Acids

11.52

Weight (kDa)

6.91

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 36 - 106 8.3e-20 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 42
AclWI GGATC 4 cut(s) 176, 189, 292, 305
AcoI YGGCCR 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 51, 56
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 2 cut(s) 55, 256
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 4 cut(s) 33, 149, 155, 292
AluI AGCT 4 cut(s) 33, 149, 155, 292
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 4 cut(s) 176, 189, 292, 305
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 2 cut(s) 53, 95
ApeKI GCWGC 2 cut(s) 269, 284
AspLEI GCGC 1 cut(s) 12
AvaI CYCGRG 1 cut(s) 34
BamHI GGATCC 2 cut(s) 181, 297
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 256, 296
BccI CCATC 1 cut(s) 208
BceAI ACGGC 2 cut(s) 82, 143
BciT130I CCWGG 2 cut(s) 57, 258
BcoDI GTCTC 1 cut(s) 160
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 3 cut(s) 188, 293, 322
BglII AGATCT 1 cut(s) 90
BisI GCNGC 2 cut(s) 270, 285
BlsI GCNGC 2 cut(s) 271, 286
Bme1390I CCNGG 2 cut(s) 57, 258
BmeT110I CYCGRG 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 183, 299
BmrFI CCNGG 2 cut(s) 57, 258
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 144, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 56
BseBI CCWGG 2 cut(s) 57, 258
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 51, 56
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 3 cut(s) 125, 128, 224
BseXI GCAGC 2 cut(s) 256, 296
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 55, 97
BsiHKCI CYCGRG 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 51, 56
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 2 cut(s) 55, 97
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 90, 181, 297
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 55, 97
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 183, 299
BspPI GGATC 4 cut(s) 176, 189, 292, 305
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 90, 181, 297
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 57, 258
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 3 cut(s) 93, 184, 300
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 90, 181, 297
BstNI CCWGG 2 cut(s) 57, 258
BstSCI CCNGG 2 cut(s) 55, 256
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 256, 296
BstX2I RGATCY 3 cut(s) 90, 181, 297
BstYI RGATCY 3 cut(s) 90, 181, 297
BsuRI GGCC 2 cut(s) 55, 97
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 12
CviAII CATG 1 cut(s) 122
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 92, 183, 299
DpnII GATC 3 cut(s) 90, 181, 297
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 55, 256
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 125
FaiI YATR 2 cut(s) 102, 123
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 270, 285
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 270, 285
FspBI CTAG 3 cut(s) 188, 293, 322
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 270, 285
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 2 cut(s) 55, 97
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 2 cut(s) 19, 22
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 226, 247
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 90, 181, 297
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 42, 69, 79, 135, 243, 261, 270
Lsp1109I GCAGC 2 cut(s) 256, 296
MaeI CTAG 3 cut(s) 188, 293, 322
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 92, 183, 299
MboI GATC 3 cut(s) 90, 181, 297
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 64
MflI RGATCY 3 cut(s) 90, 181, 297
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 64, 73, 237
MnlI CCTC 5 cut(s) 103, 106, 170, 202, 308
MseI TTAA 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 57, 258
MunI CAATTG 1 cut(s) 64
MvaI CCWGG 2 cut(s) 57, 258
MvnI CGCG 1 cut(s) 10
NdeII GATC 3 cut(s) 90, 181, 297
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 183, 299
NmuCI GTSAC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PkrI GCNGC 2 cut(s) 271, 286
Psp6I CCWGG 2 cut(s) 55, 256
PspGI CCWGG 2 cut(s) 55, 256
PspN4I GGNNCC 2 cut(s) 183, 299
PsuI RGATCY 3 cut(s) 90, 181, 297
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 270, 285
Sau3AI GATC 3 cut(s) 90, 181, 297
ScrFI CCNGG 2 cut(s) 57, 258
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 35, 61, 151, 157, 262, 294
Sfr274I CTCGAG 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 3 cut(s) 64, 73, 237
SsiI CCGC 1 cut(s) 42
SspMI CTAG 3 cut(s) 188, 293, 322
StyD4I CCNGG 2 cut(s) 55, 256
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 64, 73, 237
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 269, 284
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XhoI CTCGAG 1 cut(s) 34
XspI CTAG 3 cut(s) 188, 293, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.