RLG00000026696

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011596
Physical Location & Seq
Reverse (-)
5091484 .. 5092405
922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026696

Sequence Viewer

Length: 318 bp
ATGAGATATCTTACTTTATTCTATGTTACGCAGCAACACAGACCCTACCCGATCTGCGCCGTTCCGATCACATTCCACTTCTTCAAGTATACCGGATACCAACGTGAGATTGATCCTCCGCGAGACCTTAGTACTGTTTATATTAGCCGAATAACTTATGTAAGTACTGAAGTACTTAGAGTCCATCCCTCATCCAATAGGACTGCGGATCTACGGGATCAGATTGCTACGCTTCTCTCCGACTCTATACGTATTACAGAAGAAGACCAGTCGACTATAATTGAAAAGGTATGGTTTGTGGATTATCGACGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.57

Weight (kDa)

6.83

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 89, 272
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 119, 206
AclWI GGATC 3 cut(s) 107, 216, 225
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 3 cut(s) 133, 166, 174
AgsI TTSAA 2 cut(s) 85, 284
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 3 cut(s) 107, 216, 225
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 44
BciVI GTATCC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 3 cut(s) 133, 166, 174
BpiI GAAGAC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 184, 191
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 5 cut(s) 51, 66, 112, 208, 217
BspACI CCGC 2 cut(s) 119, 206
BspFNI CGCG 1 cut(s) 121
BspPI GGATC 3 cut(s) 107, 216, 225
BspTNI GGTCTC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 268
BssMI GATC 5 cut(s) 51, 66, 112, 208, 217
BssNAI GTATAC 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 128, 176
BstF5I GGATG 2 cut(s) 184, 191
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 5 cut(s) 54, 69, 115, 211, 220
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 5 cut(s) 51, 66, 112, 208, 217
BstSNI TACGTA 1 cut(s) 251
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 90
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 184, 191
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 3 cut(s) 132, 165, 173
CviJI RGCY 1 cut(s) 147
CviKI_1 RGCY 1 cut(s) 147
CviQI GTAC 3 cut(s) 132, 165, 173
DdeI CTNAG 2 cut(s) 128, 176
DpnI GATC 5 cut(s) 53, 68, 114, 210, 219
DpnII GATC 5 cut(s) 51, 66, 112, 208, 217
Eco105I TACGTA 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 8
FaiI YATR 7 cut(s) 24, 90, 141, 159, 248, 278, 292
FblI GTMKAC 2 cut(s) 89, 272
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 2 cut(s) 171, 178
Fsp4HI GCNGC 1 cut(s) 32
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 32
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 180, 242
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 90, 273
Hpy188I TCNGA 3 cut(s) 66, 222, 241
Hpy8I GTNNAC 2 cut(s) 90, 273
Hpy99I CGWCG 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 103, 250
HpyF3I CTNAG 2 cut(s) 128, 176
HpySE526I ACGT 2 cut(s) 103, 250
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 51, 66, 112, 208, 217
LpnPI CCDG 2 cut(s) 106, 281
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 2 cut(s) 103, 250
MaeIII GTNAC 1 cut(s) 25
MalI GATC 5 cut(s) 53, 68, 114, 210, 219
MboI GATC 5 cut(s) 51, 66, 112, 208, 217
MboII GAAGA 3 cut(s) 73, 272, 275
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 279
MlyI GAGTC 2 cut(s) 189, 236
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 2 cut(s) 126, 199
MspI CCGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 121
NdeII GATC 5 cut(s) 51, 66, 112, 208, 217
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 2 cut(s) 188, 236
PpsI GAGTC 2 cut(s) 188, 236
Ppu21I YACGTR 1 cut(s) 251
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 3 cut(s) 133, 166, 174
RsaNI GTAC 3 cut(s) 132, 165, 173
SalI GTCGAC 1 cut(s) 271
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 5 cut(s) 51, 66, 112, 208, 217
ScaI AGTACT 3 cut(s) 133, 166, 174
SchI GAGTC 2 cut(s) 189, 236
SetI ASST 4 cut(s) 106, 129, 253, 291
SgeI CNNG 8 cut(s) 61, 97, 105, 116, 132, 134, 227, 280
SnaBI TACGTA 1 cut(s) 251
Sse9I AATT 1 cut(s) 279
SsiI CCGC 2 cut(s) 119, 206
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 106, 253
TaqI TCGA 2 cut(s) 272, 307
TasI AATT 1 cut(s) 279
TatI WGTACW 3 cut(s) 131, 164, 172
TseI GCWGC 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 89, 272
ZrmI AGTACT 3 cut(s) 133, 166, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.