Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Forward (+)

62592120 .. 62592888

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGATATCTTACTTTATTCCATGTTTCGCAGCAACACAGACCCTACCCGATCTGCGCCGTTCCGATCACATTCCACTTCTACAAGTATAACGGATACCAACGTGAGATTGATCCTCCGCGAGACCTTAGTACTGTTTATATTAGCCGAATAACTTTTCAGTACTTACATGTACTTAGAGTCCATCCCTCATCCAATAGGACTGCGGATCTACGGGATCAGATTGCTACGCTCCTCTCCGACTCTATACGTGTCACAGAAGAGGACCAGTCAACTATAATTGAAAAGATATTTCAGGTGCTTGCCCCGGACCCCGAGCTTTGTATTTTTGTTGATGTGGCGGAAGTGACTCTGCAGATAGCGGATGACATTGACGCGGTTCTTGCAACGGAGTCCTTAAGAACATATATTCCCAAGCTTATTCCGGCAACTAAATCATCTATTGAAGGTTTGGAGAAAGTAGGGCTTGATAGCTTGGAAATCAAATCTAGTATTGAACTGACACCATCTTGTGTTATTGTATGGAGGACCTTGATTACTCTGCAGAAGAAGGAGAGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

187

Amino Acids

21.4

Weight (kDa)

5.73

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	121, 377
AciI	CCGC	5 cut(s)	119, 206, 341, 362, 377
AclWI	GGATC	3 cut(s)	107, 216, 225
AfaI	GTAC	3 cut(s)	133, 164, 174
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	169, 250
AgsI	TTSAA	3 cut(s)	284, 446, 497
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	319, 418, 474
AluI	AGCT	3 cut(s)	319, 418, 474
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	107, 216, 225
Ama87I	CYCGRG	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	265, 310, 528
AsuC2I	CCSGG	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	265, 310, 528
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	192, 514
BceAI	ACGGC	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	353, 542
BfrI	CTTAAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmcAI	AGTACT	2 cut(s)	133, 164
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	265, 310, 528
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	3 cut(s)	265, 310, 528
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	184, 191, 370
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	121, 377
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	308, 425
BsmAI	GTCTC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	51, 66, 112, 208, 217
BspACI	CCGC	5 cut(s)	119, 206, 341, 362, 377
BspFNI	CGCG	2 cut(s)	121, 377
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	2 cut(s)	357, 546
BspPI	GGATC	3 cut(s)	107, 216, 225
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	51, 66, 112, 208, 217
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	128, 176
BstF5I	GGATG	3 cut(s)	184, 191, 370
BstFNI	CGCG	2 cut(s)	121, 377
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	5 cut(s)	54, 69, 115, 211, 220
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	51, 66, 112, 208, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	353, 542
BstUI	CGCG	2 cut(s)	121, 377
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	184, 191, 370
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	265, 310, 528
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	132, 163, 173
CviAII	CATG	2 cut(s)	23, 170
CviJI	RGCY	5 cut(s)	147, 319, 418, 466, 474
CviKI_1	RGCY	5 cut(s)	147, 319, 418, 466, 474
CviQI	GTAC	3 cut(s)	132, 163, 173
DdeI	CTNAG	2 cut(s)	128, 176
DpnI	GATC	5 cut(s)	53, 68, 114, 210, 219
DpnII	GATC	5 cut(s)	51, 66, 112, 208, 217
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	265, 310, 528
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	8
FaeI	CATG	2 cut(s)	26, 173
FaiI	YATR	9 cut(s)	24, 90, 141, 171, 248, 278, 406, 408, 523
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	2 cut(s)	22, 169
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	171, 178, 377
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	32
HapII	CCGG	2 cut(s)	308, 425
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	26, 173
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	180, 242, 349, 392
HpaII	CCGG	2 cut(s)	308, 425
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	66, 222, 241
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	440, 544
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	103, 250
HpyCH4V	TGCA	3 cut(s)	355, 386, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	128, 176
HpySE526I	ACGT	2 cut(s)	103, 250
Hsp92II	CATG	2 cut(s)	26, 173
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	51, 66, 112, 208, 217
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	4 cut(s)	281, 281, 321, 438
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	103, 250
MaeIII	GTNAC	2 cut(s)	253, 346
MalI	GATC	5 cut(s)	53, 68, 114, 210, 219
MboI	GATC	5 cut(s)	51, 66, 112, 208, 217
MboII	GAAGA	2 cut(s)	272, 559
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	4 cut(s)	189, 236, 343, 401
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	126, 199, 245, 256, 519, 549
MseI	TTAA	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	308, 425
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	121, 377
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	5 cut(s)	51, 66, 112, 208, 217
NlaIII	CATG	2 cut(s)	26, 173
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	253, 346
NspI	RCATGY	1 cut(s)	173
PciI	ACATGT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	4 cut(s)	188, 236, 343, 400
PpsI	GAGTC	4 cut(s)	188, 236, 343, 400
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	528
PscI	ACATGT	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	3 cut(s)	265, 310, 528
PspPPI	RGGWCCY	1 cut(s)	528
PstI	CTGCAG	2 cut(s)	357, 546
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	133, 164, 174
RsaNI	GTAC	3 cut(s)	132, 163, 173
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	5 cut(s)	51, 66, 112, 208, 217
Sau96I	GGNCC	3 cut(s)	265, 310, 528
ScaI	AGTACT	2 cut(s)	133, 164
SchI	GAGTC	4 cut(s)	189, 236, 343, 401
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	9 cut(s)	106, 129, 253, 300, 321, 420, 451, 476, 533
SfcI	CTRYAG	2 cut(s)	353, 542
SinI	GGWCC	3 cut(s)	265, 310, 528
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	5 cut(s)	119, 206, 341, 362, 377
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	106, 253
TasI	AATT	1 cut(s)	279
TatI	WGTACW	3 cut(s)	131, 162, 172
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseFI	GTSAC	2 cut(s)	253, 346
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	253, 346
TspGWI	ACGGA	2 cut(s)	108, 404
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	265, 310, 528
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	2 cut(s)	133, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.