Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

13801714 .. 13802265

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1071000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGTACACGTCGAGTCATCAAGACCTTTCATTCCTATTTTGGACCCCACCTTCGGAGCACAGTACCATTATCATCCCAGCACCAGCAAAAGCTACTCAAGCAAGTGACATTGCTATTGTGCTTGCCTCTTCAGAGGGGCTTTCTGCGAAATCTAATACAGCTTCTGCAATAGCATCTGGAACTGTGTTGGGGATATATGAAGATGGCAGGTACAAATCAGAGTCAAAGAAATCAGCTTTGAAATCTGTGGACATTCTTGGTCTTGGAACTGGAGCTGAAGTAGAGAAGAAGCTCAAGTATACTGAAGATGTTACTTCTGGAATAATTTTTGGGAAAGAGCTAGTAAATTCACCTGCCAATGCTCTTACACCAGGGAAACTAGCTGAAGAGGCCTCAAAGATTACCTCCACATACAGTGATGTTCTATCTGCAAACATATTAAATGAAGAGCAATGCAAAGAATTGAAAATGGGTTCTTATTTGGCTGTTGCCGCAGCCTCAACAAATCCCCCGCATTTTATTCACTTGATTTACAAACCCCCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

184

Amino Acids

19.35

Weight (kDa)

6.08

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	112 - 182	1.6e-13	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	201, 364
AccI	GTMKAC	1 cut(s)	302
AciI	CCGC	2 cut(s)	495, 515
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	4 cut(s)	117, 300, 327, 408
AfaI	GTAC	3 cut(s)	8, 67, 215
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	244, 469
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	2 cut(s)	373, 544
AluBI	AGCT	7 cut(s)	95, 164, 239, 278, 295, 343, 386
AluI	AGCT	7 cut(s)	95, 164, 239, 278, 295, 343, 386
Alw21I	GWGCWC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	349
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	375, 546
BfaI	CTAG	2 cut(s)	344, 383
BfuAI	ACCTGC	2 cut(s)	201, 364
BisI	GCNGC	2 cut(s)	495, 498
BlsI	GCNGC	2 cut(s)	496, 499
Bme1390I	CCNGG	2 cut(s)	375, 546
Bme18I	GGWCC	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	375, 546
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	84, 281
BsaJI	CCNNGG	2 cut(s)	374, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	111, 461
BseBI	CCWGG	2 cut(s)	375, 546
BseDI	CCNNGG	2 cut(s)	374, 544
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	111, 461
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	509
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	495, 515
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	2 cut(s)	201, 364
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	111, 461
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	374, 544
BssNAI	GTATAC	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	375, 546
Bst4CI	ACNGT	3 cut(s)	65, 187, 419
Bst6I	CTCTTC	3 cut(s)	136, 384, 444
BstC8I	GCNNGC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 392, 494
BstNI	CCWGG	2 cut(s)	375, 546
BstSCI	CCNGG	2 cut(s)	373, 544
BstV1I	GCAGC	1 cut(s)	509
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	2 cut(s)	201, 364
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	7, 66, 214
CviQI	GTAC	3 cut(s)	7, 66, 214
Eam1104I	CTCTTC	3 cut(s)	136, 384, 444
EarI	CTCTTC	3 cut(s)	136, 384, 444
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	45
Eco57I	CTGAAG	4 cut(s)	117, 300, 327, 408
EcoRII	CCWGG	2 cut(s)	373, 544
FaiI	YATR	5 cut(s)	199, 201, 303, 415, 440
FauI	CCCGC	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	495, 498
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	495, 498
FspBI	CTAG	2 cut(s)	344, 383
GluI	GCNGC	2 cut(s)	495, 498
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	395
HinfI	GANTC	2 cut(s)	16, 224
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	9, 253, 303
Hpy188I	TCNGA	3 cut(s)	58, 136, 223
Hpy188III	TCNNGA	3 cut(s)	23, 180, 321
Hpy8I	GTNNAC	3 cut(s)	9, 253, 303
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	3 cut(s)	65, 187, 419
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	170, 434, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 392, 494
HpySE526I	ACGT	1 cut(s)	11
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	58, 275
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	344, 383
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	107, 313
MboII	GAAGA	6 cut(s)	123, 215, 301, 320, 401, 461
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	3 cut(s)	327, 349, 464
MlyI	GAGTC	2 cut(s)	25, 233
MnlI	CCTC	6 cut(s)	130, 139, 385, 406, 418, 511
MseI	TTAA	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	375, 546
MvaI	CCWGG	2 cut(s)	375, 546
MwoI	GCNNNNNNNGC	3 cut(s)	101, 392, 494
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	496, 499
PleI	GAGTC	2 cut(s)	24, 232
PpsI	GAGTC	2 cut(s)	24, 232
Psp6I	CCWGG	2 cut(s)	373, 544
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	373, 544
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	8, 67, 215
RsaNI	GTAC	3 cut(s)	7, 66, 214
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	495, 498
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	2 cut(s)	25, 233
ScrFI	CCNGG	2 cut(s)	375, 546
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	99, 296
SmoI	CTYRAG	2 cut(s)	99, 296
Sse9I	AATT	3 cut(s)	327, 349, 464
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	495, 515
SspMI	CTAG	2 cut(s)	344, 383
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	373, 544
TaaI	ACNGT	3 cut(s)	65, 187, 419
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	327, 349, 464
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	17, 21, 216, 462
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	302
XspI	CTAG	2 cut(s)	344, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.