Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

27666968 .. 27668023

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGCTCGCTTTCGCGACGAAAGAGATTGATGTAACGAAATGGAAAGAGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCAAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAAGAAAGTCTGGCCAGTCTACGGGTCTTGGGGAGCCTGCAGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAACTCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTAGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTCTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGGTTCGAAACTAGCAGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAACATTGAATGAAGAGCAATGCAAAGATCTGAAAATTGGTTCCTATTTGGCTGTGGCCGCAGCTTCAGCAAATCCTCCATATTTTATTCAGTTGACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

252

Amino Acids

26.64

Weight (kDa)

8.55

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	74 - 125	4.8e-08	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	162 - 251	1.3e-17	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	3 cut(s)	63, 514, 715
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	62, 236, 648
AcoI	YGGCCR	2 cut(s)	199, 645
AcsI	RAATTY	2 cut(s)	107, 499
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	3 cut(s)	61, 208, 288
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	127, 598
AjnI	CCWGG	2 cut(s)	523, 697
AluBI	AGCT	9 cut(s)	7, 133, 314, 335, 389, 445, 493, 653, 715
AluI	AGCT	9 cut(s)	7, 133, 314, 335, 389, 445, 493, 653, 715
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	199, 546, 645
ApeKI	GCWGC	4 cut(s)	227, 230, 233, 650
ApoI	RAATTY	2 cut(s)	107, 499
AspS9I	GGNCC	2 cut(s)	52, 425
AsuHPI	GGTGA	2 cut(s)	495, 713
AsuII	TTCGAA	2 cut(s)	111, 530
AvaII	GGWCC	2 cut(s)	52, 425
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	495
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	239, 242, 245, 662
BciT130I	CCWGG	2 cut(s)	525, 699
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	392
BfuAI	ACCTGC	3 cut(s)	63, 514, 715
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	6 cut(s)	228, 231, 234, 237, 648, 651
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	6 cut(s)	229, 232, 235, 238, 649, 652
Bme1390I	CCNGG	2 cut(s)	525, 699
Bme18I	GGWCC	2 cut(s)	52, 425
BmgT120I	GGNCC	2 cut(s)	52, 425
BmiI	GGNNCC	2 cut(s)	222, 631
BmrFI	CCNGG	2 cut(s)	525, 699
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	2 cut(s)	111, 530
BpuEI	CTTGAG	5 cut(s)	106, 234, 431, 441, 455
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	282, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 208, 288
Bse1I	ACTGG	2 cut(s)	202, 427
Bse3DI	GCAATG	2 cut(s)	555, 614
BseBI	CCWGG	2 cut(s)	525, 699
BseDI	CCNNGG	2 cut(s)	282, 697
BseLI	CCNNNNNNNGG	3 cut(s)	61, 208, 288
BseMI	GCAATG	2 cut(s)	555, 614
BseMII	CTCAG	2 cut(s)	153, 363
BseNI	ACTGG	2 cut(s)	202, 427
BseXI	GCAGC	4 cut(s)	239, 242, 245, 662
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	201, 548, 647
BsiHKAI	GWGCWC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	61, 208, 288
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	201, 548, 647
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	2 cut(s)	111, 530
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	94, 616
Bsp1720I	GCTNAGC	1 cut(s)	711
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	3 cut(s)	62, 236, 648
BspANI	GGCC	3 cut(s)	201, 548, 647
BspCNI	CTCAG	2 cut(s)	154, 364
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	222, 631
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	3 cut(s)	63, 514, 715
BspQI	GCTCTTC	1 cut(s)	597
BspT104I	TTCGAA	2 cut(s)	111, 530
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	555, 614
BsrI	ACTGG	2 cut(s)	202, 427
BssECI	CCNNGG	2 cut(s)	282, 697
BssMI	GATC	2 cut(s)	94, 616
Bst2UI	CCWGG	2 cut(s)	525, 699
Bst6I	CTCTTC	2 cut(s)	537, 597
BstAFI	CTTAAG	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBI	TTCGAA	2 cut(s)	111, 530
BstC8I	GCNNGC	4 cut(s)	9, 60, 225, 276
BstDEI	CTNAG	5 cut(s)	162, 174, 372, 416, 711
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	97, 619
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	94, 616
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 236, 245, 332, 545, 647, 656
BstNI	CCWGG	2 cut(s)	525, 699
BstSCI	CCNGG	2 cut(s)	523, 697
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	239, 242, 245, 662
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	201, 548, 647
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	3 cut(s)	63, 514, 715
Cac8I	GCNNGC	4 cut(s)	9, 60, 225, 276
Cfr13I	GGNCC	2 cut(s)	52, 425
CsiI	ACCWGGT	1 cut(s)	523
DdeI	CTNAG	5 cut(s)	162, 174, 372, 416, 711
DpnI	GATC	2 cut(s)	96, 618
DpnII	GATC	2 cut(s)	94, 616
EaeI	YGGCCR	2 cut(s)	199, 645
Eam1104I	CTCTTC	2 cut(s)	537, 597
EarI	CTCTTC	2 cut(s)	537, 597
Ecl136II	GAGCTC	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	52, 425
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	523, 697
EcoT38I	GRGCYC	1 cut(s)	495
FaiI	YATR	7 cut(s)	349, 351, 366, 453, 568, 570, 670
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	228, 231, 234, 237, 648, 651
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	6 cut(s)	228, 231, 234, 237, 648, 651
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	6 cut(s)	228, 231, 234, 237, 648, 651
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	201, 548, 647
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	2 cut(s)	312, 713
HinfI	GANTC	2 cut(s)	137, 374
HphI	GGTGA	2 cut(s)	495, 713
Hpy166II	GTNNAC	4 cut(s)	207, 403, 684, 704
Hpy188I	TCNGA	6 cut(s)	99, 120, 286, 373, 621, 744
Hpy188III	TCNNGA	6 cut(s)	16, 169, 330, 458, 471, 496
Hpy8I	GTNNAC	4 cut(s)	207, 403, 684, 704
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	227, 309, 587, 612
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 236, 245, 332, 545, 647, 656
HpyF3I	CTNAG	5 cut(s)	162, 174, 372, 416, 711
Kzo9I	GATC	2 cut(s)	94, 616
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	2 cut(s)	220, 332
Lsp1109I	GCAGC	4 cut(s)	239, 242, 245, 662
LweI	GCATC	1 cut(s)	335
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	34, 70
MalI	GATC	2 cut(s)	96, 618
MboI	GATC	2 cut(s)	94, 616
MboII	GAAGA	5 cut(s)	139, 365, 451, 554, 614
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	4 cut(s)	107, 499, 624, 719
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	9 cut(s)	43, 81, 157, 172, 280, 292, 538, 559, 675
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	393, 717
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	525, 699
MvaI	CCWGG	2 cut(s)	525, 699
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	233, 236, 245, 332, 545, 647, 656
NdeII	GATC	2 cut(s)	94, 616
NlaIV	GGNNCC	2 cut(s)	222, 631
NruI	TCGCGA	1 cut(s)	17
NspV	TTCGAA	2 cut(s)	111, 530
PaqCI	CACCTGC	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	6 cut(s)	229, 232, 235, 238, 649, 652
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	523, 697
PspGI	CCWGG	2 cut(s)	523, 697
PspN4I	GGNNCC	2 cut(s)	222, 631
PspPI	GGNCC	2 cut(s)	52, 425
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	616
RruI	TCGCGA	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	393, 717
SatI	GCNGC	6 cut(s)	228, 231, 234, 237, 648, 651
Sau3AI	GATC	2 cut(s)	94, 616
Sau96I	GGNCC	2 cut(s)	52, 425
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	525, 699
SduI	GDGCHC	1 cut(s)	495
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	2 cut(s)	111, 530
SinI	GGWCC	2 cut(s)	52, 425
SmlI	CTYRAG	6 cut(s)	85, 249, 392, 434, 446, 456
SmoI	CTYRAG	6 cut(s)	85, 249, 392, 434, 446, 456
Sse9I	AATT	4 cut(s)	107, 499, 624, 719
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	62, 236, 648
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	523, 697
TaqI	TCGA	3 cut(s)	111, 170, 530
TasI	AATT	4 cut(s)	107, 499, 624, 719
TauI	GCSGC	2 cut(s)	239, 650
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	393, 717
Tru9I	TTAA	2 cut(s)	393, 717
TseI	GCWGC	4 cut(s)	227, 230, 233, 650
TspDTI	ATGAA	3 cut(s)	17, 366, 615
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	52, 425
XapI	RAATTY	2 cut(s)	107, 499
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.