Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

69526019 .. 69527412

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGGCGAATTTCAACGACTTCGGAACCAAGCATGACCTCCCAATGGGCCTGATGGAGAACAACTTTACCACGTTTCTCTCCACCGGTAACCCCAGCCTCGATCTCTTCTTCCACGTCATCCCAAATACTCCAGGCGACTACCTCACCGATGGGACTCCAATGGTGGCCAGTGTCGTAGGGAAGAAGCACATGGCTCACACAATTGCTCACACCACTCTCGGCCTCACTCAGATTTCTCCGCTCACTTTCGCAACGAAAGAGATTGATGTAACAAAATGGAAAGGGGCAGGTGTTGGTGTTACACAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTCAAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGAAGTCTTGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCGAATAGGGTTGGCTTGTTTGGGCTTGGACAATTTGGTTCGTCTACAGAAGCTTTTAAGGGTCTTTGGGAGGCTGCAGCAGCAGCGGCAAAGACTACTCAAGCAAGAGCAGTTTTGGGTATATATGAAGACAATAGGTATAAATCTGAGTCAAATAAACCAGCTCTTAAGTCTATGGACAGTCTTGGTCTTGGAATTGGACCTGAACTTGAGAAGAAGCTCAAGAATGCTCAAGATGTTGCTTATGGAATAATACTTGGGAAAGAGCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

246

Amino Acids

26.31

Weight (kDa)

7.81

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	99 - 192	3.6e-14	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	437, 509
AciI	CCGC	2 cut(s)	242, 551
AcoI	YGGCCR	2 cut(s)	168, 430
AcsI	RAATTY	2 cut(s)	10, 338
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	46, 439, 461
AflII	CTTAAG	1 cut(s)	632
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	16, 343, 358
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	133, 454
AluBI	AGCT	4 cut(s)	364, 518, 629, 685
AluI	AGCT	4 cut(s)	364, 518, 629, 685
AoxI	GGCC	4 cut(s)	49, 168, 223, 430
ApeKI	GCWGC	4 cut(s)	539, 542, 545, 548
ApoI	RAATTY	2 cut(s)	10, 338
AsiGI	ACCGGT	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	49, 665
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	665
BalI	TGGCCA	2 cut(s)	170, 432
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	526, 554, 557, 560
BccI	CCATC	2 cut(s)	49, 146
BciT130I	CCWGG	2 cut(s)	135, 456
BfmI	CTRYAG	2 cut(s)	510, 540
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	540, 543, 546, 549, 552
BlsI	GCNGC	5 cut(s)	541, 544, 547, 550, 553
Bme1390I	CCNGG	2 cut(s)	135, 456
Bme18I	GGWCC	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	49, 665
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	135, 456
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	4 cut(s)	549, 671, 681, 695
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 439, 461
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	171, 433
BseBI	CCWGG	2 cut(s)	135, 456
BseGI	GGATG	2 cut(s)	120, 733
BseLI	CCNNNNNNNGG	3 cut(s)	46, 439, 461
BseMII	CTCAG	3 cut(s)	245, 396, 603
BseNI	ACTGG	2 cut(s)	171, 433
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	526, 554, 557, 560
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	4 cut(s)	51, 170, 225, 432
BshTI	ACCGGT	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	46, 439, 461
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	4 cut(s)	51, 170, 225, 432
Bsp143I	GATC	2 cut(s)	103, 325
BspACI	CCGC	2 cut(s)	242, 551
BspANI	GGCC	4 cut(s)	51, 170, 225, 432
BspCNI	CTCAG	3 cut(s)	244, 397, 604
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	171, 433
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	2 cut(s)	103, 325
Bst2UI	CCWGG	2 cut(s)	135, 456
Bst4CI	ACNGT	2 cut(s)	442, 647
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	231, 405, 612
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	120, 733
BstKTI	GATC	2 cut(s)	106, 328
BstMBI	GATC	2 cut(s)	103, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 548, 551
BstNI	CCWGG	2 cut(s)	135, 456
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	133, 454
BstSFI	CTRYAG	2 cut(s)	510, 540
BstV1I	GCAGC	4 cut(s)	526, 554, 557, 560
BstV2I	GAAGAC	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	51, 170, 225, 432
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	120, 733
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	49, 665
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	2 cut(s)	35, 193
DdeI	CTNAG	3 cut(s)	231, 405, 612
DpnI	GATC	2 cut(s)	105, 327
DpnII	GATC	2 cut(s)	103, 325
EaeI	YGGCCR	2 cut(s)	168, 430
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	133, 454
FaeI	CATG	2 cut(s)	38, 196
FaiI	YATR	9 cut(s)	36, 194, 587, 589, 591, 606, 641, 711, 739
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	34, 192
FblI	GTMKAC	2 cut(s)	437, 509
Fnu4HI	GCNGC	5 cut(s)	540, 543, 546, 549, 552
FokI	GGATG	2 cut(s)	107, 720
Fsp4HI	GCNGC	5 cut(s)	540, 543, 546, 549, 552
GluI	GCNGC	5 cut(s)	540, 543, 546, 549, 552
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	51, 170, 225, 432
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	2 cut(s)	38, 196
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	157, 368, 614
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	438, 510
Hpy188I	TCNGA	5 cut(s)	26, 234, 330, 351, 613
Hpy188III	TCNNGA	3 cut(s)	400, 688, 698
Hpy8I	GTNNAC	2 cut(s)	438, 510
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	442, 647
HpyCH4IV	ACGT	2 cut(s)	74, 117
HpyCH4V	TGCA	1 cut(s)	542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 548, 551
HpyF3I	CTNAG	3 cut(s)	231, 405, 612
HpySE526I	ACGT	2 cut(s)	74, 117
Hsp92II	CATG	2 cut(s)	38, 196
Kzo9I	GATC	2 cut(s)	103, 325
Lsp1109I	GCAGC	4 cut(s)	526, 554, 557, 560
MaeII	ACGT	2 cut(s)	74, 117
MaeIII	GTNAC	3 cut(s)	89, 271, 301
MalI	GATC	2 cut(s)	105, 327
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	103, 325
MboII	GAAGA	6 cut(s)	100, 103, 196, 370, 605, 691
MfeI	CAATTG	1 cut(s)	204
MlsI	TGGCCA	2 cut(s)	170, 432
MluCI	AATT	5 cut(s)	10, 204, 338, 497, 660
MluNI	TGGCCA	2 cut(s)	170, 432
MlyI	GAGTC	2 cut(s)	151, 623
MnlI	CCTC	7 cut(s)	50, 110, 155, 236, 400, 403, 529
Mox20I	TGGCCA	2 cut(s)	170, 432
MscI	TGGCCA	2 cut(s)	170, 432
MseI	TTAA	2 cut(s)	522, 633
Msp20I	TGGCCA	2 cut(s)	170, 432
MspA1I	CMGCKG	1 cut(s)	551
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	135, 456
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	135, 456
MwoI	GCNNNNNNNGC	3 cut(s)	545, 548, 551
NdeII	GATC	2 cut(s)	103, 325
NlaIII	CATG	2 cut(s)	38, 196
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	281
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	368
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	541, 544, 547, 550, 553
PleI	GAGTC	2 cut(s)	151, 622
PpsI	GAGTC	2 cut(s)	151, 622
Psp6I	CCWGG	2 cut(s)	133, 454
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	133, 454
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	49, 665
PstI	CTGCAG	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	522, 633
SatI	GCNGC	5 cut(s)	540, 543, 546, 549, 552
Sau3AI	GATC	2 cut(s)	103, 325
Sau96I	GGNCC	2 cut(s)	49, 665
SchI	GAGTC	2 cut(s)	151, 623
ScrFI	CCNGG	2 cut(s)	135, 456
SfcI	CTRYAG	2 cut(s)	510, 540
SinI	GGWCC	1 cut(s)	665
SmlI	CTYRAG	5 cut(s)	564, 632, 674, 686, 696
SmoI	CTYRAG	5 cut(s)	564, 632, 674, 686, 696
Sse9I	AATT	5 cut(s)	10, 204, 338, 497, 660
SsiI	CCGC	2 cut(s)	242, 551
StyD4I	CCNGG	2 cut(s)	133, 454
TaaI	ACNGT	2 cut(s)	442, 647
TaiI	ACGT	2 cut(s)	77, 120
TaqI	TCGA	3 cut(s)	102, 335, 467
TasI	AATT	5 cut(s)	10, 204, 338, 497, 660
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	522, 633
Tru9I	TTAA	2 cut(s)	522, 633
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	4 cut(s)	539, 542, 545, 548
TspDTI	ATGAA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	10, 338
XmiI	GTMKAC	2 cut(s)	437, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.