Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

974768 .. 990769

Gene Structure 16002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTGGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGCAGTCACTTCATCTTCTTCACCTTCATATTCTTCTTCGTTTTTAACCAAACTAAGGCACGCGCCGAGTCTGCGACTTTGTTTTGCAGTCTCGCCCTTGAGAGTGAAGAAGCACATGGCTCACACTATCGCTCGCGCCACTCTCGGCCTCACTCAGATTTCTCCGGCCTTTGAAGCCCCTAAGATTGTTGACCTTGCCACGTTGACTGGTGCCTGCATAGTTGCCCTTGGACCGTCTATTGCAGGTGTCTTCACACCCAGCGATGACCTCGCGAAGGAGGTATTTGCAGCTTCGGAGATAAGTGGGGAGAAATTTTGGAGAATGCCAATGGAGGAGAGTTATTGGGAATCAATGAAATCAGGAGTAGCTGATATGGTCAACACTGGTGGTCGTCAAGGTGGTGCTATCAGTGCAGCTCTCTTCTTGAAACAGTTTGTTGATGAAAAGGTTCAGTGGTTGCATATTGACATGGGTGGGCCTGTTTGGAGTGATAAGAAACGCGCTGCGACAGGGTTTGCTATTTCTACCCTGGTGGAGTGGGTTTTGAAGAACTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

199

Amino Acids

21.29

Weight (kDa)

8.93

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	64 - 191	4.8e-40	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	4 cut(s)	101, 174, 311, 540
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	93, 313
AgsI	TTSAA	3 cut(s)	212, 466, 586
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	3 cut(s)	329, 407, 455
AluI	AGCT	3 cut(s)	329, 407, 455
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	4 cut(s)	6, 184, 204, 515
ApeKI	GCWGC	3 cut(s)	326, 452, 542
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	3 cut(s)	103, 176, 542
AspS9I	GGNCC	2 cut(s)	269, 515
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	338, 464, 529
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	3 cut(s)	327, 453, 543
BlsI	GCNGC	3 cut(s)	328, 454, 544
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	269, 515
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	265, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 313
Bse1I	ACTGG	3 cut(s)	9, 250, 427
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	265, 567
BseLI	CCNNNNNNNGG	2 cut(s)	93, 313
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	3 cut(s)	9, 250, 427
BseRI	GAGGAG	2 cut(s)	386, 583
BseXI	GCAGC	3 cut(s)	338, 464, 529
BseYI	CCCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	4 cut(s)	101, 174, 311, 540
BshFI	GGCC	4 cut(s)	8, 186, 206, 517
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	93, 313
BsmAI	GTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	4 cut(s)	8, 186, 206, 517
Bsp68I	TCGCGA	1 cut(s)	311
BspANI	GGCC	4 cut(s)	8, 186, 206, 517
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	4 cut(s)	101, 174, 311, 540
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	9, 250, 427
BssECI	CCNNGG	2 cut(s)	265, 567
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	273, 471
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	99, 172, 253
BstDEI	CTNAG	4 cut(s)	92, 192, 219, 597
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstFNI	CGCG	4 cut(s)	101, 174, 311, 540
BstHHI	GCGC	3 cut(s)	103, 176, 542
BstMAI	GTCTC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 212, 449
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstUI	CGCG	4 cut(s)	101, 174, 311, 540
BstV1I	GCAGC	3 cut(s)	338, 464, 529
BstV2I	GAAGAC	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	8, 186, 206, 517
BtgZI	GCGATG	1 cut(s)	315
BtsIMutI	CAGTG	4 cut(s)	16, 420, 454, 497
BtuMI	TCGCGA	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	99, 172, 253
CfoI	GCGC	3 cut(s)	103, 176, 542
Cfr13I	GGNCC	2 cut(s)	269, 515
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	2 cut(s)	154, 508
DdeI	CTNAG	4 cut(s)	92, 192, 219, 597
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	157, 511
FaiI	YATR	6 cut(s)	67, 155, 257, 413, 501, 509
FatI	CATG	2 cut(s)	153, 507
Fnu4HI	GCNGC	3 cut(s)	327, 453, 543
Fsp4HI	GCNGC	3 cut(s)	327, 453, 543
GlaI	GCGC	3 cut(s)	102, 175, 541
GluI	GCNGC	3 cut(s)	327, 453, 543
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	4 cut(s)	8, 186, 206, 517
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	3 cut(s)	103, 176, 542
Hin1II	CATG	2 cut(s)	157, 511
Hin6I	GCGC	3 cut(s)	101, 174, 540
HinP1I	GCGC	3 cut(s)	101, 174, 540
HincII	GTYRAC	3 cut(s)	229, 243, 418
HindII	GTYRAC	3 cut(s)	229, 243, 418
HinfI	GANTC	2 cut(s)	106, 386
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	229, 243, 418
Hpy188I	TCNGA	2 cut(s)	195, 334
Hpy188III	TCNNGA	3 cut(s)	310, 399, 463
Hpy8I	GTNNAC	3 cut(s)	229, 243, 418
HpyAV	CCTTC	2 cut(s)	72, 307
HpyCH4III	ACNGT	2 cut(s)	273, 471
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	125, 255, 281, 326, 452, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 212, 449
HpyF3I	CTNAG	4 cut(s)	92, 192, 219, 597
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	157, 511
HspAI	GCGC	3 cut(s)	101, 174, 540
Lsp1109I	GCAGC	3 cut(s)	338, 464, 529
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	9 cut(s)	21, 45, 48, 63, 66, 157, 280, 451, 598
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	4 cut(s)	197, 310, 317, 364
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	4 cut(s)	101, 174, 311, 540
MwoI	GCNNNNNNNGC	3 cut(s)	109, 212, 449
NlaIII	CATG	2 cut(s)	157, 511
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	2 cut(s)	129, 162
NmuCI	GTSAC	1 cut(s)	43
NruI	TCGCGA	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	328, 454, 544
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	269, 515
RruI	TCGCGA	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	327, 453, 543
Sau96I	GGNCC	2 cut(s)	269, 515
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	569
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	273, 471
TaiI	ACGT	1 cut(s)	242
TasI	AATT	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	4 cut(s)	16, 427, 454, 497
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	326, 452, 542
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	39, 54, 407, 495
TspRI	CASTG	4 cut(s)	16, 427, 454, 497
VpaK11BI	GGWCC	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.