Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

12960950 .. 12961955

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGACCTGCTTGCGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGTTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGCCTGCAGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTATGCGAACTCTTGCAAAGCTTCTGCGATAGTATCTGGAGCTGTTTTGGGGATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTCTAGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGGTTCGAAACTAGCAGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAATCATTTAATGAAGAGCAGTGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCCGCAGCTTCAGCAAATCCTCCACATTTTATTCAGTTGACCTACAAACCCCCTGGTGAACCTGGTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

222

Amino Acids

22.92

Weight (kDa)

9.12

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	6 - 95	6.4e-17	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	132 - 221	4.9e-18	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	2 cut(s)	16, 424
AccI	GTMKAC	2 cut(s)	32, 104
AciI	CCGC	3 cut(s)	15, 146, 558
AcoI	YGGCCR	2 cut(s)	25, 555
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	549
AfiI	CCNNNNNNNGG	4 cut(s)	14, 34, 56, 198
AflII	CTTAAG	1 cut(s)	302
AjnI	CCWGG	4 cut(s)	49, 433, 607, 616
AluBI	AGCT	8 cut(s)	113, 224, 245, 299, 355, 403, 563, 625
AluI	AGCT	8 cut(s)	113, 224, 245, 299, 355, 403, 563, 625
Alw21I	GWGCWC	1 cut(s)	405
AoxI	GGCC	3 cut(s)	25, 456, 555
ApeKI	GCWGC	4 cut(s)	137, 140, 143, 560
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	5, 335
AsuHPI	GGTGA	2 cut(s)	405, 623
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	2 cut(s)	5, 335
BalI	TGGCCA	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	149, 152, 155, 572
BciT130I	CCWGG	4 cut(s)	51, 435, 609, 618
BfaI	CTAG	2 cut(s)	381, 446
BfmI	CTRYAG	2 cut(s)	105, 135
BfrI	CTTAAG	1 cut(s)	302
BfuAI	ACCTGC	2 cut(s)	16, 424
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	6 cut(s)	138, 141, 144, 147, 558, 561
BlsI	GCNGC	6 cut(s)	139, 142, 145, 148, 559, 562
Bme1390I	CCNGG	4 cut(s)	51, 435, 609, 618
Bme18I	GGWCC	2 cut(s)	5, 335
BmgT120I	GGNCC	2 cut(s)	5, 335
BmiI	GGNNCC	3 cut(s)	6, 132, 541
BmrFI	CCNGG	4 cut(s)	51, 435, 609, 618
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	4 cut(s)	144, 341, 351, 365
BsaJI	CCNNGG	2 cut(s)	192, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 34, 56, 198
Bse1I	ACTGG	2 cut(s)	28, 337
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	4 cut(s)	51, 435, 609, 618
BseDI	CCNNGG	2 cut(s)	192, 607
BseLI	CCNNNNNNNGG	4 cut(s)	14, 34, 56, 198
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	28, 337
BseXI	GCAGC	4 cut(s)	149, 152, 155, 572
BshFI	GGCC	3 cut(s)	27, 458, 557
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	14, 34, 56, 198
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	27, 458, 557
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	526
BspACI	CCGC	3 cut(s)	15, 146, 558
BspANI	GGCC	3 cut(s)	27, 458, 557
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	6, 132, 541
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	2 cut(s)	16, 424
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	440
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	28, 337
BssECI	CCNNGG	2 cut(s)	192, 607
BssMI	GATC	1 cut(s)	526
Bst2UI	CCWGG	4 cut(s)	51, 435, 609, 618
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	3 cut(s)	59, 447, 507
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	13, 135, 186
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 455, 557, 566
BstNI	CCWGG	4 cut(s)	51, 435, 609, 618
BstSCI	CCNGG	4 cut(s)	49, 433, 607, 616
BstSFI	CTRYAG	2 cut(s)	105, 135
BstV1I	GCAGC	4 cut(s)	149, 152, 155, 572
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	27, 458, 557
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	2 cut(s)	16, 424
Cac8I	GCNNGC	3 cut(s)	13, 135, 186
Cfr13I	GGNCC	2 cut(s)	5, 335
CsiI	ACCWGGT	2 cut(s)	433, 616
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	25, 555
Eam1104I	CTCTTC	3 cut(s)	59, 447, 507
EarI	CTCTTC	3 cut(s)	59, 447, 507
Ecl136II	GAGCTC	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	5, 335
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	4 cut(s)	49, 433, 607, 616
EcoT38I	GRGCYC	1 cut(s)	405
FaiI	YATR	7 cut(s)	207, 259, 261, 276, 363, 478, 480
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	2 cut(s)	32, 104
Fnu4HI	GCNGC	6 cut(s)	138, 141, 144, 147, 558, 561
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	138, 141, 144, 147, 558, 561
FspBI	CTAG	2 cut(s)	381, 446
GluI	GCNGC	6 cut(s)	138, 141, 144, 147, 558, 561
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	27, 458, 557
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	3 cut(s)	111, 222, 623
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	2 cut(s)	405, 623
Hpy166II	GTNNAC	5 cut(s)	33, 105, 313, 594, 614
Hpy188I	TCNGA	4 cut(s)	196, 283, 531, 654
Hpy188III	TCNNGA	4 cut(s)	240, 368, 381, 406
Hpy8I	GTNNAC	5 cut(s)	33, 105, 313, 594, 614
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	137, 219, 497, 522
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 455, 557, 566
HpyF3I	CTNAG	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	526
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	2 cut(s)	130, 242
Lsp1109I	GCAGC	4 cut(s)	149, 152, 155, 572
MabI	ACCWGGT	2 cut(s)	433, 616
MaeI	CTAG	2 cut(s)	381, 446
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	5 cut(s)	76, 275, 361, 464, 524
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	2 cut(s)	409, 629
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	60, 190, 202, 448, 469, 585
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	4 cut(s)	117, 303, 507, 627
Msp20I	TGGCCA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	146
MspCI	CTTAAG	1 cut(s)	302
MspR9I	CCNGG	4 cut(s)	51, 435, 609, 618
MvaI	CCWGG	4 cut(s)	51, 435, 609, 618
MwoI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 455, 557, 566
NdeII	GATC	1 cut(s)	526
NlaIV	GGNNCC	3 cut(s)	6, 132, 541
NspV	TTCGAA	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	507
PkrI	GCNGC	6 cut(s)	139, 142, 145, 148, 559, 562
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	4 cut(s)	49, 433, 607, 616
PspGI	CCWGG	4 cut(s)	49, 433, 607, 616
PspN4I	GGNNCC	3 cut(s)	6, 132, 541
PspPI	GGNCC	2 cut(s)	5, 335
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	117, 303, 507, 627
SatI	GCNGC	6 cut(s)	138, 141, 144, 147, 558, 561
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	2 cut(s)	5, 335
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	4 cut(s)	51, 435, 609, 618
SduI	GDGCHC	1 cut(s)	405
SexAI	ACCWGGT	2 cut(s)	433, 616
SfcI	CTRYAG	2 cut(s)	105, 135
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	2 cut(s)	5, 335
SmlI	CTYRAG	5 cut(s)	159, 302, 344, 356, 366
SmoI	CTYRAG	5 cut(s)	159, 302, 344, 356, 366
Sse9I	AATT	2 cut(s)	409, 629
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	3 cut(s)	15, 146, 558
SspMI	CTAG	2 cut(s)	381, 446
SstI	GAGCTC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	49, 433, 607, 616
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	62, 440
TasI	AATT	2 cut(s)	409, 629
TauI	GCSGC	2 cut(s)	149, 560
Tru1I	TTAA	4 cut(s)	117, 303, 507, 627
Tru9I	TTAA	4 cut(s)	117, 303, 507, 627
TscAI	CASTG	1 cut(s)	524
TseI	GCWGC	4 cut(s)	137, 140, 143, 560
TspDTI	ATGAA	2 cut(s)	276, 525
TspRI	CASTG	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	5, 335
XapI	RAATTY	1 cut(s)	409
XbaI	TCTAGA	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	32, 104
XspI	CTAG	2 cut(s)	381, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.