Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

11826583 .. 11828936

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTAACCATCTCATTCTGGTTATTCTGCTTTGCCTCGTTTTGGAAAGATACCAAACATGTGGTTGCCGGTGTTTCTATTTGTGTTGGGGCTTGCTCACTTTCACGACGAAAGAGATTGATGTAACAGAATGGAAAGGGGGCCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTTGAAAATCCGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGATGTCTTGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACTGTTGTTAAGCTTCCTGGTCTTGGCTTGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAATGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGATAATAAGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTTTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCCGGGAAACTAACAGAAGAGGCCTCAAATATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAATATTAAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCAACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGATAGGTGGTTACAGATTGACTTAGAACAATGTATTTTTTACCCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

324

Amino Acids

34.56

Weight (kDa)

7.47

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	51 - 183	5e-25	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	220 - 308	3.1e-18	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	688
Acc36I	ACCTGC	2 cut(s)	688, 886
AccI	GTMKAC	2 cut(s)	296, 368
AciI	CCGC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	197, 673
AfiI	CCNNNNNNNGG	4 cut(s)	43, 151, 320, 462
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	203, 217, 328
AjnI	CCWGG	2 cut(s)	313, 868
AluBI	AGCT	9 cut(s)	223, 310, 377, 488, 509, 563, 619, 667, 886
AluI	AGCT	9 cut(s)	223, 310, 377, 488, 509, 563, 619, 667, 886
Alw21I	GWGCWC	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	3 cut(s)	142, 289, 717
ApeKI	GCWGC	5 cut(s)	398, 401, 404, 818, 821
ApoI	RAATTY	2 cut(s)	197, 673
AspS9I	GGNCC	2 cut(s)	142, 599
AsuC2I	CCSGG	2 cut(s)	699, 700
AsuHPI	GGTGA	2 cut(s)	669, 884
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	826
BbvI	GCAGC	5 cut(s)	385, 413, 416, 805, 833
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	2 cut(s)	315, 870
BcnI	CCSGG	2 cut(s)	699, 700
BfaI	CTAG	2 cut(s)	966, 973
BfmI	CTRYAG	3 cut(s)	369, 399, 819
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	2 cut(s)	688, 886
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	5 cut(s)	399, 402, 405, 819, 822
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	5 cut(s)	400, 403, 406, 820, 823
Bme1390I	CCNGG	4 cut(s)	315, 699, 700, 870
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	142, 599
BmiI	GGNNCC	2 cut(s)	143, 802
BmrFI	CCNGG	4 cut(s)	315, 699, 700, 870
BmsI	GCATC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	826
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	4 cut(s)	408, 605, 615, 629
BpuMI	CCSGG	2 cut(s)	699, 700
BsaJI	CCNNGG	3 cut(s)	456, 698, 868
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 151, 320, 462
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	292, 601
Bse3DI	GCAATG	2 cut(s)	414, 785
BseBI	CCWGG	2 cut(s)	315, 870
BseDI	CCNNGG	3 cut(s)	456, 698, 868
BseLI	CCNNNNNNNGG	4 cut(s)	43, 151, 320, 462
BseMI	GCAATG	2 cut(s)	414, 785
BseMII	CTCAG	3 cut(s)	255, 537, 840
BseNI	ACTGG	2 cut(s)	292, 601
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	5 cut(s)	385, 413, 416, 805, 833
BshFI	GGCC	3 cut(s)	144, 291, 719
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	70, 699
BslI	CCNNNNNNNGG	4 cut(s)	43, 151, 320, 462
BsnI	GGCC	3 cut(s)	144, 291, 719
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	2 cut(s)	184, 787
Bsp1720I	GCTNAGC	1 cut(s)	882
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	144, 291, 719
BspCNI	CTCAG	3 cut(s)	256, 538, 839
BspLI	GGNNCC	2 cut(s)	143, 802
BspMAI	CTGCAG	2 cut(s)	403, 823
BspMI	ACCTGC	2 cut(s)	688, 886
BspQI	GCTCTTC	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	2 cut(s)	414, 785
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	292, 601
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	456, 698, 868
BssMI	GATC	2 cut(s)	184, 787
Bst2UI	CCWGG	2 cut(s)	315, 870
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	3 cut(s)	323, 708, 768
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	4 cut(s)	95, 146, 150, 450
BstDEI	CTNAG	5 cut(s)	264, 546, 826, 882, 943
BstKTI	GATC	2 cut(s)	187, 790
BstMBI	GATC	2 cut(s)	184, 787
BstMWI	GCNNNNNNNGC	6 cut(s)	404, 410, 419, 506, 818, 827
BstNI	CCWGG	2 cut(s)	315, 870
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	4 cut(s)	313, 697, 698, 868
BstSFI	CTRYAG	3 cut(s)	369, 399, 819
BstV1I	GCAGC	5 cut(s)	385, 413, 416, 805, 833
BstX2I	RGATCY	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	3 cut(s)	144, 291, 719
BveI	ACCTGC	2 cut(s)	688, 886
Cac8I	GCNNGC	4 cut(s)	95, 146, 150, 450
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	142, 599
Cfr9I	CCCGGG	1 cut(s)	698
CviAII	CATG	1 cut(s)	60
DdeI	CTNAG	5 cut(s)	264, 546, 826, 882, 943
DpnI	GATC	2 cut(s)	186, 789
DpnII	GATC	2 cut(s)	184, 787
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	323, 708, 768
EarI	CTCTTC	3 cut(s)	323, 708, 768
Ecl136II	GAGCTC	1 cut(s)	667
Eco147I	AGGCCT	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	667
Eco88I	CYCGRG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	313, 868
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	1 cut(s)	63
FaiI	YATR	7 cut(s)	61, 523, 525, 540, 627, 739, 741
FatI	CATG	1 cut(s)	59
FblI	GTMKAC	2 cut(s)	296, 368
Fnu4HI	GCNGC	5 cut(s)	399, 402, 405, 819, 822
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	399, 402, 405, 819, 822
FspBI	CTAG	2 cut(s)	966, 973
GluI	GCNGC	5 cut(s)	399, 402, 405, 819, 822
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	144, 291, 719
HapII	CCGG	2 cut(s)	70, 699
Hin1II	CATG	1 cut(s)	63
HindIII	AAGCTT	4 cut(s)	308, 375, 486, 884
HinfI	GANTC	3 cut(s)	227, 548, 969
HpaII	CCGG	2 cut(s)	70, 699
HphI	GGTGA	2 cut(s)	669, 884
Hpy166II	GTNNAC	4 cut(s)	297, 369, 577, 875
Hpy188I	TCNGA	6 cut(s)	189, 210, 460, 547, 792, 915
Hpy188III	TCNNGA	5 cut(s)	106, 259, 504, 632, 670
Hpy8I	GTNNAC	4 cut(s)	297, 369, 577, 875
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	401, 483, 758, 783, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	404, 410, 419, 506, 818, 827
HpyF3I	CTNAG	5 cut(s)	264, 546, 826, 882, 943
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	184, 787
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	5 cut(s)	385, 413, 416, 805, 833
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	2 cut(s)	966, 973
MaeIII	GTNAC	3 cut(s)	124, 160, 930
MalI	GATC	2 cut(s)	186, 789
MboI	GATC	2 cut(s)	184, 787
MboII	GAAGA	6 cut(s)	229, 340, 539, 625, 725, 785
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	669
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	3 cut(s)	197, 673, 890
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	557, 963
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	5 cut(s)	306, 381, 567, 767, 888
Msp20I	TGGCCA	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	2 cut(s)	70, 699
MspR9I	CCNGG	4 cut(s)	315, 699, 700, 870
MvaI	CCWGG	2 cut(s)	315, 870
MwoI	GCNNNNNNNGC	6 cut(s)	404, 410, 419, 506, 818, 827
NciI	CCSGG	2 cut(s)	699, 700
NdeII	GATC	2 cut(s)	184, 787
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	2 cut(s)	143, 802
NspI	RCATGY	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	719
PciI	ACATGT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	768
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	5 cut(s)	400, 403, 406, 820, 823
PleI	GAGTC	2 cut(s)	556, 963
PpsI	GAGTC	2 cut(s)	556, 963
PscI	ACATGT	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	669
Psp6I	CCWGG	2 cut(s)	313, 868
PspGI	CCWGG	2 cut(s)	313, 868
PspN4I	GGNNCC	2 cut(s)	143, 802
PspPI	GGNCC	2 cut(s)	142, 599
PstI	CTGCAG	2 cut(s)	403, 823
PsuI	RGATCY	1 cut(s)	787
SacI	GAGCTC	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	306, 381, 567, 767, 888
SatI	GCNGC	5 cut(s)	399, 402, 405, 819, 822
Sau3AI	GATC	2 cut(s)	184, 787
Sau96I	GGNCC	2 cut(s)	142, 599
SchI	GAGTC	2 cut(s)	557, 963
ScrFI	CCNGG	4 cut(s)	315, 699, 700, 870
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	3 cut(s)	369, 399, 819
SinI	GGWCC	1 cut(s)	599
SmaI	CCCGGG	1 cut(s)	700
SmlI	CTYRAG	5 cut(s)	423, 566, 608, 620, 630
SmoI	CTYRAG	5 cut(s)	423, 566, 608, 620, 630
Sse9I	AATT	3 cut(s)	197, 673, 890
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	2 cut(s)	727, 765
SspMI	CTAG	2 cut(s)	966, 973
SstI	GAGCTC	1 cut(s)	669
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	4 cut(s)	313, 697, 698, 868
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	197, 673, 890
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	5 cut(s)	306, 381, 567, 767, 888
Tru9I	TTAA	5 cut(s)	306, 381, 567, 767, 888
TseI	GCWGC	5 cut(s)	398, 401, 404, 818, 821
TspDTI	ATGAA	2 cut(s)	540, 786
TspMI	CCCGGG	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	197, 673
XceI	RCATGY	1 cut(s)	63
XmaI	CCCGGG	1 cut(s)	698
XmiI	GTMKAC	2 cut(s)	296, 368
XspI	CTAG	2 cut(s)	966, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.