Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

866585 .. 892381

Gene Structure 25797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGTGTCATTGGCTTCTTCCTTTATCGCAGTCACTTCATCTTCTTCACCTTCATATTCTTCTTCGTTTTTAACCAAACTAAGGCACGCGCCGAGCCTGCGACTTTGTTTTGCAGTCTCGCCCTTGAGAGTGAAGAAGCACATGGCTCACACTATCGCTCGCGCCACTCTCGGCCTCACTCAGATTTCTCCGGCCTTTGAAGCCCCTAAGCTCACTTTGGCGACGAAAGAGGTTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTCGAAAATCCGATTTTGAAGAAGCTGGATTCCTGTTTTGGTGGGGTGTTGGCTGAGGTCTCGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCACAGCTTCTGCAATAGCATCTGGAGCTGTTTTGGGGATATATGAAGATAACAGGTATAAATCTGAGTCAAAAAAACCAGCTCTCAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTAGAGAAGAAGCTCAAATATGCTCAAGATGTTGCTGCTGGAATAATACTTGGGAAAGAGCTCGTGAATTCACCTGCCAATGTTCTCACACCTGGGAAACTAGCAGAAGAGGCCTCAAATATTGCTTCCTTATACAGTGATGTTCTTTCTGCAAAGATATTGAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCTACAAACCCCCTGGTGGACCTGCTAAGCTTAAATTAGCATTGGTCGGTAAAGGTCTGACTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGTTTGATATGGGAGGTTCGGCTGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATTAGTGGAACAGGTATGAGGCCTGGAGACATTGTCACAGCTTCCAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGACTGACTTTGGCAGATGCATTGGTATATGCTTGTAATCAAGGTGTTGACAAGGTATTTTCTACAGTGATATATCATAACTATCCTATTTGTATCTGCAATATTGGTCGATCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

468

Amino Acids

48.61

Weight (kDa)

8.55

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	89 - 221	1.2e-26	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	258 - 448	3.6e-68	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	802
Acc36I	ACCTGC	3 cut(s)	267, 802, 1000
AccI	GTMKAC	2 cut(s)	410, 482
AccII	CGCG	2 cut(s)	89, 162
AciI	CCGC	2 cut(s)	266, 524
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	311, 787
AcuI	CTGAAG	1 cut(s)	1302
AfiI	CCNNNNNNNGG	6 cut(s)	81, 265, 412, 434, 576, 986
AgsI	TTSAA	4 cut(s)	200, 331, 883, 1077
AjnI	CCWGG	5 cut(s)	427, 811, 982, 1066, 1222
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	121, 376, 1221
AlwNI	CAGNNNCTG	3 cut(s)	605, 1067, 1280
AoxI	GGCC	5 cut(s)	172, 192, 403, 831, 1220
ApoI	RAATTY	2 cut(s)	311, 787
AspLEI	GCGC	2 cut(s)	91, 164
AspS9I	GGNCC	4 cut(s)	256, 713, 989, 1064
AsuHPI	GGTGA	2 cut(s)	39, 783
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	4 cut(s)	256, 713, 989, 1064
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	783
BauI	CACGAG	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	783
BbvCI	CCTCAGC	2 cut(s)	366, 940
BciT130I	CCWGG	5 cut(s)	429, 813, 984, 1068, 1224
BcoDI	GTCTC	3 cut(s)	121, 376, 1221
BfaI	CTAG	2 cut(s)	722, 821
BfmI	CTRYAG	4 cut(s)	483, 513, 933, 1350
BfuAI	ACCTGC	3 cut(s)	267, 802, 1000
BglII	AGATCT	1 cut(s)	901
BlpI	GCTNAGC	1 cut(s)	996
Bme1390I	CCNGG	5 cut(s)	429, 813, 984, 1068, 1224
Bme18I	GGWCC	4 cut(s)	256, 713, 989, 1064
BmgT120I	GGNCC	4 cut(s)	256, 713, 989, 1064
BmiI	GGNNCC	2 cut(s)	257, 916
BmrFI	CCNGG	5 cut(s)	429, 813, 984, 1068, 1224
BmsI	GCATC	3 cut(s)	623, 1267, 1294
BpmI	CTGGAG	2 cut(s)	639, 1245
Bpu10I	CCTNAGC	3 cut(s)	207, 366, 940
Bpu1102I	GCTNAGC	1 cut(s)	996
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	4 cut(s)	145, 522, 665, 729
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	570, 812, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	1218, 1248
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 265, 412, 434, 576, 986
Bse1I	ACTGG	2 cut(s)	406, 715
Bse3DI	GCAATG	1 cut(s)	899
BseBI	CCWGG	5 cut(s)	429, 813, 984, 1068, 1224
BseDI	CCNNGG	3 cut(s)	570, 812, 982
BseLI	CCNNNNNNNGG	6 cut(s)	81, 265, 412, 434, 576, 986
BseMI	GCAATG	1 cut(s)	899
BseMII	CTCAG	5 cut(s)	194, 357, 369, 651, 954
BseNI	ACTGG	2 cut(s)	406, 715
BseRI	GAGGAG	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	1146
Bsh1236I	CGCG	2 cut(s)	89, 162
Bsh1285I	CGRYCG	1 cut(s)	1400
BshFI	GGCC	5 cut(s)	174, 194, 405, 833, 1222
BsiEI	CGRYCG	1 cut(s)	1400
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	6 cut(s)	81, 265, 412, 434, 576, 986
BsmAI	GTCTC	3 cut(s)	121, 376, 1221
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	5 cut(s)	174, 194, 405, 833, 1222
Bso31I	GGTCTC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	298, 901, 1397
Bsp1720I	GCTNAGC	1 cut(s)	996
BspACI	CCGC	2 cut(s)	266, 524
BspANI	GGCC	5 cut(s)	174, 194, 405, 833, 1222
BspCNI	CTCAG	5 cut(s)	193, 358, 370, 652, 953
BspFNI	CGCG	2 cut(s)	89, 162
BspLI	GGNNCC	2 cut(s)	257, 916
BspMAI	CTGCAG	2 cut(s)	517, 937
BspMI	ACCTGC	3 cut(s)	267, 802, 1000
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	406, 715
BssECI	CCNNGG	3 cut(s)	570, 812, 982
BssMI	GATC	3 cut(s)	298, 901, 1397
BssSI	CACGAG	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	5 cut(s)	429, 813, 984, 1068, 1224
Bst4CI	ACNGT	4 cut(s)	415, 857, 1040, 1354
Bst6I	CTCTTC	3 cut(s)	437, 822, 882
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	5 cut(s)	87, 98, 160, 264, 564
BstDEI	CTNAG	8 cut(s)	80, 180, 207, 366, 378, 660, 940, 996
BstFNI	CGCG	2 cut(s)	89, 162
BstHHI	GCGC	2 cut(s)	91, 164
BstKTI	GATC	3 cut(s)	301, 904, 1400
BstMAI	GTCTC	3 cut(s)	121, 376, 1221
BstMBI	GATC	3 cut(s)	298, 901, 1397
BstMCI	CGRYCG	1 cut(s)	1400
BstNI	CCWGG	5 cut(s)	429, 813, 984, 1068, 1224
BstSCI	CCNGG	5 cut(s)	427, 811, 982, 1066, 1222
BstSFI	CTRYAG	4 cut(s)	483, 513, 933, 1350
BstUI	CGCG	2 cut(s)	89, 162
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	5 cut(s)	174, 194, 405, 833, 1222
BtsIMutI	CAGTG	3 cut(s)	862, 1045, 1359
BveI	ACCTGC	3 cut(s)	267, 802, 1000
Cac8I	GCNNGC	5 cut(s)	87, 98, 160, 264, 564
CaiI	CAGNNNCTG	3 cut(s)	605, 1067, 1280
CfoI	GCGC	2 cut(s)	91, 164
Cfr13I	GGNCC	4 cut(s)	256, 713, 989, 1064
CviAII	CATG	1 cut(s)	142
DdeI	CTNAG	8 cut(s)	80, 180, 207, 366, 378, 660, 940, 996
DpnI	GATC	3 cut(s)	300, 903, 1399
DpnII	GATC	3 cut(s)	298, 901, 1397
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	3 cut(s)	437, 822, 882
EarI	CTCTTC	3 cut(s)	437, 822, 882
Ecl136II	GAGCTC	1 cut(s)	781
Eco147I	AGGCCT	2 cut(s)	833, 1222
Eco24I	GRGCYC	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	4 cut(s)	256, 713, 989, 1064
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	1302
EcoICRI	GAGCTC	1 cut(s)	781
EcoO109I	RGGNCCY	2 cut(s)	256, 1064
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	5 cut(s)	427, 811, 982, 1066, 1222
EcoT22I	ATGCAT	1 cut(s)	1309
EcoT38I	GRGCYC	1 cut(s)	783
FaeI	CATG	1 cut(s)	145
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	410, 482
FriOI	GRGCYC	1 cut(s)	783
FspBI	CTAG	2 cut(s)	722, 821
GlaI	GCGC	2 cut(s)	90, 163
GsuI	CTGGAG	2 cut(s)	639, 1245
HaeIII	GGCC	5 cut(s)	174, 194, 405, 833, 1222
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	2 cut(s)	91, 164
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	2 cut(s)	89, 162
HinP1I	GCGC	2 cut(s)	89, 162
HincII	GTYRAC	1 cut(s)	1336
HindII	GTYRAC	1 cut(s)	1336
HindIII	AAGCTT	2 cut(s)	489, 998
HinfI	GANTC	2 cut(s)	341, 662
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	39, 783
Hpy166II	GTNNAC	5 cut(s)	411, 483, 691, 989, 1336
Hpy188I	TCNGA	7 cut(s)	183, 303, 324, 574, 661, 906, 1029
Hpy188III	TCNNGA	5 cut(s)	373, 618, 746, 784, 1057
Hpy8I	GTNNAC	5 cut(s)	411, 483, 691, 989, 1336
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	60, 277, 1164, 1277
HpyCH4III	ACNGT	4 cut(s)	415, 857, 1040, 1354
HpyF3I	CTNAG	8 cut(s)	80, 180, 207, 366, 378, 660, 940, 996
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	2 cut(s)	89, 162
Kzo9I	GATC	3 cut(s)	298, 901, 1397
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	1 cut(s)	620
LweI	GCATC	3 cut(s)	623, 1267, 1294
MaeI	CTAG	2 cut(s)	722, 821
MaeIII	GTNAC	4 cut(s)	31, 238, 274, 1234
MalI	GATC	3 cut(s)	300, 903, 1399
MboI	GATC	3 cut(s)	298, 901, 1397
MfeI	CAATTG	1 cut(s)	1077
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	1 cut(s)	783
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	4 cut(s)	311, 787, 1004, 1077
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	1309
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	71, 495, 1002
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	5 cut(s)	429, 813, 984, 1068, 1224
MunI	CAATTG	1 cut(s)	1077
MvaI	CCWGG	5 cut(s)	429, 813, 984, 1068, 1224
MvnI	CGCG	2 cut(s)	89, 162
NdeII	GATC	3 cut(s)	298, 901, 1397
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	257, 916
NmeAIII	GCCGAG	2 cut(s)	117, 150
NmuCI	GTSAC	2 cut(s)	31, 1234
NsiI	ATGCAT	1 cut(s)	1309
NspV	TTCGAA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	802
PceI	AGGCCT	2 cut(s)	833, 1222
PciSI	GCTCTTC	1 cut(s)	882
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	1232
Ple19I	CGATCG	1 cut(s)	1400
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PpuMI	RGGWCCY	2 cut(s)	256, 1064
Psp124BI	GAGCTC	1 cut(s)	783
Psp5II	RGGWCCY	2 cut(s)	256, 1064
Psp6I	CCWGG	5 cut(s)	427, 811, 982, 1066, 1222
PspGI	CCWGG	5 cut(s)	427, 811, 982, 1066, 1222
PspN4I	GGNNCC	2 cut(s)	257, 916
PspPI	GGNCC	4 cut(s)	256, 713, 989, 1064
PspPPI	RGGWCCY	2 cut(s)	256, 1064
PstI	CTGCAG	2 cut(s)	517, 937
PstNI	CAGNNNCTG	3 cut(s)	605, 1067, 1280
PsuI	RGATCY	1 cut(s)	901
PsyI	GACNNNGTC	1 cut(s)	1232
PvuI	CGATCG	1 cut(s)	1400
SacI	GAGCTC	1 cut(s)	783
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	3 cut(s)	71, 495, 1002
Sau3AI	GATC	3 cut(s)	298, 901, 1397
Sau96I	GGNCC	4 cut(s)	256, 713, 989, 1064
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	5 cut(s)	429, 813, 984, 1068, 1224
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	3 cut(s)	623, 1267, 1294
SfcI	CTRYAG	4 cut(s)	483, 513, 933, 1350
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	4 cut(s)	256, 713, 989, 1064
SmlI	CTYRAG	4 cut(s)	124, 537, 680, 744
SmoI	CTYRAG	4 cut(s)	124, 537, 680, 744
Sse9I	AATT	4 cut(s)	311, 787, 1004, 1077
SseBI	AGGCCT	2 cut(s)	833, 1222
SsiI	CCGC	2 cut(s)	266, 524
SspI	AATATT	2 cut(s)	841, 1390
SspMI	CTAG	2 cut(s)	722, 821
SstI	GAGCTC	1 cut(s)	783
StuI	AGGCCT	2 cut(s)	833, 1222
StyD4I	CCNGG	5 cut(s)	427, 811, 982, 1066, 1222
TaaI	ACNGT	4 cut(s)	415, 857, 1040, 1354
TaqI	TCGA	5 cut(s)	308, 315, 374, 440, 1396
TasI	AATT	4 cut(s)	311, 787, 1004, 1077
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	71, 495, 1002
Tru9I	TTAA	3 cut(s)	71, 495, 1002
TscAI	CASTG	3 cut(s)	862, 1045, 1359
TseFI	GTSAC	2 cut(s)	31, 1234
Tsp45I	GTSAC	2 cut(s)	31, 1234
TspDTI	ATGAA	7 cut(s)	27, 42, 654, 900, 1103, 1160, 1165
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	862, 1045, 1359
Tth111I	GACNNNGTC	1 cut(s)	1232
VpaK11BI	GGWCC	4 cut(s)	256, 713, 989, 1064
XapI	RAATTY	2 cut(s)	311, 787
XmiI	GTMKAC	2 cut(s)	410, 482
XspI	CTAG	2 cut(s)	722, 821
Zsp2I	ATGCAT	1 cut(s)	1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.