Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

28233235 .. 28237672

Gene Structure 4438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG233200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACCGGTTGGCTGTCTCCAATCATCGCTTTGCATGGCGGCAGGGCAGGGCGAGGCAAAAGCTTCGTCGCCTGTTTTCTAGCCCTCTGTCATGCGATCGTGGTGGTAGAGGAGAAGCTTTCAGCGTTGATAGCATGGTCTGTTCAGCTCGCTTTCGCGACGAAAGAGATTGATGTAACGAAATGGAAAGAGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCAAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGCCTGCAGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAACTCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTAGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTCTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAACATTGAATGAAGAGCAATGCAAAGATCTGAAAATTGGTTCCTATTTGGCTGTGGCCGCAGCTTCAGCAAATCCTCCATATTTTATTCAGTTGACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTCAATAACACAGATGCTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCGCATGTTTTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

323

Amino Acids

34.06

Weight (kDa)

6.84

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	102 - 176	6.8e-13	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	213 - 290	9.5e-11	Cytosol aminopeptidase family, catalytic domain
Peptidase_M17	PF00883	289 - 309	6.5e-06	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	667
Acc36I	ACCTGC	3 cut(s)	204, 667, 853
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	158
AciI	CCGC	5 cut(s)	39, 203, 389, 786, 935
AclWI	GGATC	1 cut(s)	954
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	248, 652
AcuI	CTGAAG	3 cut(s)	699, 777, 906
AfiI	CCNNNNNNNGG	2 cut(s)	202, 441
AflII	CTTAAG	1 cut(s)	545
AgeI	ACCGGT	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	268, 736
AjnI	CCWGG	1 cut(s)	835
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	954
AlwNI	CAGNNNCTG	1 cut(s)	884
AoxI	GGCC	2 cut(s)	684, 783
ApeKI	GCWGC	4 cut(s)	380, 383, 386, 788
ApoI	RAATTY	2 cut(s)	248, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AsiGI	ACCGGT	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	193, 578
AsuHPI	GGTGA	2 cut(s)	648, 851
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	193, 578
BanII	GRGCYC	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	392, 395, 398, 800
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	1 cut(s)	837
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	348, 378
BfrI	CTTAAG	1 cut(s)	545
BfuAI	ACCTGC	3 cut(s)	204, 667, 853
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	7 cut(s)	40, 381, 384, 387, 390, 786, 789
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	7 cut(s)	41, 382, 385, 388, 391, 787, 790
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	2 cut(s)	193, 578
BmgT120I	GGNCC	2 cut(s)	193, 578
BmiI	GGNNCC	2 cut(s)	375, 769
BmrFI	CCNGG	1 cut(s)	837
BmsI	GCATC	4 cut(s)	488, 871, 898, 932
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	5 cut(s)	247, 387, 584, 594, 608
BsaJI	CCNNGG	2 cut(s)	435, 835
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 441
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	693, 752
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	435, 835
BseLI	CCNNNNNNNGG	2 cut(s)	202, 441
BseMI	GCAATG	2 cut(s)	693, 752
BseMII	CTCAG	2 cut(s)	294, 516
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	4 cut(s)	392, 395, 398, 800
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	686, 785
BshTI	ACCGGT	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	202, 441
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	686, 785
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	96, 235, 754, 946
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	5 cut(s)	39, 203, 389, 786, 935
BspANI	GGCC	2 cut(s)	686, 785
BspCNI	CTCAG	2 cut(s)	295, 517
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	375, 769
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	3 cut(s)	204, 667, 853
BspPI	GGATC	1 cut(s)	954
BspQI	GCTCTTC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	693, 752
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	435, 835
BssMI	GATC	4 cut(s)	96, 235, 754, 946
Bst2UI	CCWGG	1 cut(s)	837
Bst6I	CTCTTC	3 cut(s)	302, 675, 735
BstAFI	CTTAAG	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	150, 201, 378, 429
BstDEI	CTNAG	4 cut(s)	303, 525, 569, 849
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	4 cut(s)	99, 238, 757, 949
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	96, 235, 754, 946
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 386, 389, 398, 485, 785, 794
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	835
BstSFI	CTRYAG	2 cut(s)	348, 378
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	392, 395, 398, 800
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	754, 946
BstYI	RGATCY	2 cut(s)	754, 946
BsuRI	GGCC	2 cut(s)	686, 785
BtgZI	GCGATG	1 cut(s)	10
BtuMI	TCGCGA	1 cut(s)	158
BveI	ACCTGC	3 cut(s)	204, 667, 853
Cac8I	GCNNGC	4 cut(s)	150, 201, 378, 429
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	193, 578
CspAI	ACCGGT	1 cut(s)	5
CviAII	CATG	4 cut(s)	35, 92, 135, 938
DdeI	CTNAG	4 cut(s)	303, 525, 569, 849
DpnI	GATC	4 cut(s)	98, 237, 756, 948
DpnII	GATC	4 cut(s)	96, 235, 754, 946
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	3 cut(s)	302, 675, 735
EarI	CTCTTC	3 cut(s)	302, 675, 735
Ecl136II	GAGCTC	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	686
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	193, 578
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	3 cut(s)	699, 777, 906
EcoICRI	GAGCTC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	835
EcoT22I	ATGCAT	2 cut(s)	913, 925
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	4 cut(s)	38, 95, 138, 941
FatI	CATG	4 cut(s)	34, 91, 134, 937
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	7 cut(s)	40, 381, 384, 387, 390, 786, 789
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	7 cut(s)	40, 381, 384, 387, 390, 786, 789
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	7 cut(s)	40, 381, 384, 387, 390, 786, 789
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	686, 785
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	4 cut(s)	38, 95, 138, 941
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HindIII	AAGCTT	5 cut(s)	61, 116, 354, 465, 851
HinfI	GANTC	3 cut(s)	278, 527, 931
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	648, 851
Hpy166II	GTNNAC	4 cut(s)	348, 556, 822, 842
Hpy188I	TCNGA	7 cut(s)	240, 261, 439, 526, 759, 964, 971
Hpy188III	TCNNGA	5 cut(s)	157, 483, 611, 624, 649
Hpy8I	GTNNAC	4 cut(s)	348, 556, 822, 842
Hpy99I	CGWCG	2 cut(s)	71, 163
HpyAV	CCTTC	2 cut(s)	214, 881
HpyCH4V	TGCA	7 cut(s)	34, 380, 462, 725, 750, 911, 923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 386, 389, 398, 485, 785, 794
HpyF3I	CTNAG	4 cut(s)	303, 525, 569, 849
Hsp92II	CATG	4 cut(s)	38, 95, 138, 941
Kzo9I	GATC	4 cut(s)	96, 235, 754, 946
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	2 cut(s)	373, 485
Lsp1109I	GCAGC	4 cut(s)	392, 395, 398, 800
LweI	GCATC	4 cut(s)	488, 871, 898, 932
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	175, 211
MalI	GATC	4 cut(s)	98, 237, 756, 948
MboI	GATC	4 cut(s)	96, 235, 754, 946
MboII	GAAGA	6 cut(s)	280, 319, 518, 604, 692, 752
MflI	RGATCY	2 cut(s)	754, 946
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	4 cut(s)	248, 652, 762, 857
MlyI	GAGTC	1 cut(s)	536
Mph1103I	ATGCAT	2 cut(s)	913, 925
MseI	TTAA	3 cut(s)	360, 546, 855
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	837
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	7 cut(s)	131, 386, 389, 398, 485, 785, 794
NdeII	GATC	4 cut(s)	96, 235, 754, 946
NlaIII	CATG	4 cut(s)	38, 95, 138, 941
NlaIV	GGNNCC	2 cut(s)	375, 769
NruI	TCGCGA	1 cut(s)	158
NsiI	ATGCAT	2 cut(s)	913, 925
NspI	RCATGY	1 cut(s)	941
NspV	TTCGAA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	686
PciSI	GCTCTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	278, 931
PinAI	ACCGGT	1 cut(s)	5
PkrI	GCNGC	7 cut(s)	41, 382, 385, 388, 391, 787, 790
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	2 cut(s)	375, 769
PspPI	GGNCC	2 cut(s)	193, 578
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	754, 946
PvuI	CGATCG	1 cut(s)	99
RruI	TCGCGA	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	360, 546, 855
SatI	GCNGC	7 cut(s)	40, 381, 384, 387, 390, 786, 789
Sau3AI	GATC	4 cut(s)	96, 235, 754, 946
Sau96I	GGNCC	2 cut(s)	193, 578
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	4 cut(s)	488, 871, 898, 932
SfcI	CTRYAG	2 cut(s)	348, 378
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	2 cut(s)	193, 578
SmlI	CTYRAG	6 cut(s)	226, 402, 545, 587, 599, 609
SmoI	CTYRAG	6 cut(s)	226, 402, 545, 587, 599, 609
Sse9I	AATT	4 cut(s)	248, 652, 762, 857
SseBI	AGGCCT	1 cut(s)	686
SsiI	CCGC	5 cut(s)	39, 203, 389, 786, 935
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	835
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	248, 652, 762, 857
TauI	GCSGC	3 cut(s)	42, 392, 788
TfiI	GAWTC	2 cut(s)	278, 931
Tru1I	TTAA	3 cut(s)	360, 546, 855
Tru9I	TTAA	3 cut(s)	360, 546, 855
TseI	GCWGC	4 cut(s)	380, 383, 386, 788
TspDTI	ATGAA	2 cut(s)	519, 753
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	193, 578
XapI	RAATTY	2 cut(s)	248, 652
XceI	RCATGY	1 cut(s)	941
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	2 cut(s)	913, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.