Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

12022915 .. 12023695

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGATAATAAGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTTTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCCGGGAAACTAACAGAAGAGGCCTCAAATATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAATATTAAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCAACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGATAGGTGGTTACAGATTGACTTAGAACAATGTATTTTTTACCCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

188

Amino Acids

19.99

Weight (kDa)

8.32

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	2 - 47	4.6e-06	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	84 - 172	9.7e-19	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	2 cut(s)	280, 478
AcsI	RAATTY	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflII	CTTAAG	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	6 cut(s)	80, 101, 155, 211, 259, 478
AluI	AGCT	6 cut(s)	80, 101, 155, 211, 259, 478
Alw21I	GWGCWC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	410, 413
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	2 cut(s)	261, 476
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	397, 425
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	2 cut(s)	291, 292
BfaI	CTAG	2 cut(s)	558, 565
BfmI	CTRYAG	1 cut(s)	411
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	2 cut(s)	280, 478
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	2 cut(s)	411, 414
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	412, 415
Bme1390I	CCNGG	3 cut(s)	291, 292, 462
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	3 cut(s)	291, 292, 462
BmsI	GCATC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	418
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	3 cut(s)	197, 207, 221
BpuMI	CCSGG	2 cut(s)	291, 292
BsaJI	CCNNGG	3 cut(s)	48, 290, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	48, 290, 460
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	129, 432
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	397, 425
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	54
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	130, 431
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	2 cut(s)	280, 478
BspQI	GCTCTTC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	48, 290, 460
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	462
Bst6I	CTCTTC	2 cut(s)	300, 360
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	138, 418, 474, 535
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 98, 410, 419
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	3 cut(s)	289, 290, 460
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	397, 425
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	311
BveI	ACCTGC	2 cut(s)	280, 478
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	191
Cfr9I	CCCGGG	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	138, 418, 474, 535
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	300, 360
EarI	CTCTTC	2 cut(s)	300, 360
Ecl136II	GAGCTC	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	261
FaiI	YATR	6 cut(s)	115, 117, 132, 219, 331, 333
Fnu4HI	GCNGC	2 cut(s)	411, 414
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	411, 414
FspBI	CTAG	2 cut(s)	558, 565
GluI	GCNGC	2 cut(s)	411, 414
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	291
HindIII	AAGCTT	2 cut(s)	78, 476
HinfI	GANTC	2 cut(s)	140, 561
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	261, 476
Hpy166II	GTNNAC	2 cut(s)	169, 467
Hpy188I	TCNGA	4 cut(s)	52, 139, 384, 507
Hpy188III	TCNNGA	3 cut(s)	96, 224, 262
Hpy8I	GTNNAC	2 cut(s)	169, 467
HpyCH4V	TGCA	4 cut(s)	75, 350, 375, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 98, 410, 419
HpyF3I	CTNAG	4 cut(s)	138, 418, 474, 535
Kzo9I	GATC	1 cut(s)	379
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	9 cut(s)	81, 165, 174, 207, 285, 304, 447, 474, 483
Lsp1109I	GCAGC	2 cut(s)	397, 425
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	558, 565
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	131, 217, 317, 377
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	265, 482
MlyI	GAGTC	2 cut(s)	149, 555
MnlI	CCTC	6 cut(s)	46, 58, 301, 322, 427, 438
MseI	TTAA	3 cut(s)	159, 359, 480
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	291, 292, 462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	11, 98, 410, 419
NciI	CCSGG	2 cut(s)	291, 292
NdeII	GATC	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	412, 415
PleI	GAGTC	2 cut(s)	148, 555
PpsI	GAGTC	2 cut(s)	148, 555
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	159, 359, 480
SatI	GCNGC	2 cut(s)	411, 414
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	149, 555
ScrFI	CCNGG	3 cut(s)	291, 292, 462
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	292
SmlI	CTYRAG	5 cut(s)	15, 158, 200, 212, 222
SmoI	CTYRAG	5 cut(s)	15, 158, 200, 212, 222
Sse9I	AATT	2 cut(s)	265, 482
SseBI	AGGCCT	1 cut(s)	311
SspI	AATATT	2 cut(s)	319, 357
SspMI	CTAG	2 cut(s)	558, 565
SstI	GAGCTC	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	289, 290, 460
TasI	AATT	2 cut(s)	265, 482
Tru1I	TTAA	3 cut(s)	159, 359, 480
Tru9I	TTAA	3 cut(s)	159, 359, 480
TseI	GCWGC	2 cut(s)	410, 413
TspDTI	ATGAA	2 cut(s)	132, 378
TspMI	CCCGGG	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	265
XmaI	CCCGGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	558, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.