Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

12017593 .. 12020625

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGTTGCCGGTGTTTCTATTTGTGTTGGGGCTTGCTCACTTTCACGACGAAAGAGATTGATGTAACAGAATGGAAAGGGGGCCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTTGAAAATCCGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGATGTCTTGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACTGTTGTTAAGCTTCCTGGTCTTGGCTTGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAATGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGATAATAAGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTTTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCCGGGAAACTAACAGAAGAGGCCTCAAATATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAATATTAAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCAACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGATAGGTGGTTACAGATTGACTTAGAACAATGTATTTTTTACCCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

304

Amino Acids

32.25

Weight (kDa)

7.49

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	31 - 163	4.3e-25	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	200 - 288	2.7e-18	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	2 cut(s)	628, 826
AccI	GTMKAC	2 cut(s)	236, 308
AciI	CCGC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	137, 613
AfiI	CCNNNNNNNGG	3 cut(s)	91, 260, 402
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	143, 157, 268
AjnI	CCWGG	2 cut(s)	253, 808
AluBI	AGCT	9 cut(s)	163, 250, 317, 428, 449, 503, 559, 607, 826
AluI	AGCT	9 cut(s)	163, 250, 317, 428, 449, 503, 559, 607, 826
Alw21I	GWGCWC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	3 cut(s)	82, 229, 657
ApeKI	GCWGC	5 cut(s)	338, 341, 344, 758, 761
ApoI	RAATTY	2 cut(s)	137, 613
AspS9I	GGNCC	2 cut(s)	82, 539
AsuC2I	CCSGG	2 cut(s)	639, 640
AsuHPI	GGTGA	2 cut(s)	609, 824
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	766
BbvI	GCAGC	5 cut(s)	325, 353, 356, 745, 773
BciT130I	CCWGG	2 cut(s)	255, 810
BcnI	CCSGG	2 cut(s)	639, 640
BfaI	CTAG	2 cut(s)	906, 913
BfmI	CTRYAG	3 cut(s)	309, 339, 759
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	628, 826
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	5 cut(s)	339, 342, 345, 759, 762
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	5 cut(s)	340, 343, 346, 760, 763
Bme1390I	CCNGG	4 cut(s)	255, 639, 640, 810
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	82, 539
BmiI	GGNNCC	2 cut(s)	83, 742
BmrFI	CCNGG	4 cut(s)	255, 639, 640, 810
BmsI	GCATC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	766
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	4 cut(s)	348, 545, 555, 569
BpuMI	CCSGG	2 cut(s)	639, 640
BsaJI	CCNNGG	3 cut(s)	396, 638, 808
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 260, 402
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	232, 541
Bse3DI	GCAATG	2 cut(s)	354, 725
BseBI	CCWGG	2 cut(s)	255, 810
BseDI	CCNNGG	3 cut(s)	396, 638, 808
BseLI	CCNNNNNNNGG	3 cut(s)	91, 260, 402
BseMI	GCAATG	2 cut(s)	354, 725
BseMII	CTCAG	3 cut(s)	195, 477, 780
BseNI	ACTGG	2 cut(s)	232, 541
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	325, 353, 356, 745, 773
BshFI	GGCC	3 cut(s)	84, 231, 659
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	10, 639
BslI	CCNNNNNNNGG	3 cut(s)	91, 260, 402
BsnI	GGCC	3 cut(s)	84, 231, 659
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	124, 727
Bsp1720I	GCTNAGC	1 cut(s)	822
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	3 cut(s)	84, 231, 659
BspCNI	CTCAG	3 cut(s)	196, 478, 779
BspLI	GGNNCC	2 cut(s)	83, 742
BspMAI	CTGCAG	2 cut(s)	343, 763
BspMI	ACCTGC	2 cut(s)	628, 826
BspQI	GCTCTTC	1 cut(s)	708
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	2 cut(s)	354, 725
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	232, 541
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	396, 638, 808
BssMI	GATC	2 cut(s)	124, 727
Bst2UI	CCWGG	2 cut(s)	255, 810
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	3 cut(s)	263, 648, 708
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	35, 86, 90, 390
BstDEI	CTNAG	5 cut(s)	204, 486, 766, 822, 883
BstKTI	GATC	2 cut(s)	127, 730
BstMBI	GATC	2 cut(s)	124, 727
BstMWI	GCNNNNNNNGC	6 cut(s)	344, 350, 359, 446, 758, 767
BstNI	CCWGG	2 cut(s)	255, 810
BstSCI	CCNGG	4 cut(s)	253, 637, 638, 808
BstSFI	CTRYAG	3 cut(s)	309, 339, 759
BstV1I	GCAGC	5 cut(s)	325, 353, 356, 745, 773
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	84, 231, 659
BveI	ACCTGC	2 cut(s)	628, 826
Cac8I	GCNNGC	4 cut(s)	35, 86, 90, 390
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	82, 539
Cfr9I	CCCGGG	1 cut(s)	638
DdeI	CTNAG	5 cut(s)	204, 486, 766, 822, 883
DpnI	GATC	2 cut(s)	126, 729
DpnII	GATC	2 cut(s)	124, 727
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	263, 648, 708
EarI	CTCTTC	3 cut(s)	263, 648, 708
Ecl136II	GAGCTC	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	539
Eco53kI	GAGCTC	1 cut(s)	607
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	253, 808
EcoT38I	GRGCYC	1 cut(s)	609
FaiI	YATR	6 cut(s)	463, 465, 480, 567, 679, 681
FblI	GTMKAC	2 cut(s)	236, 308
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 759, 762
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 759, 762
FspBI	CTAG	2 cut(s)	906, 913
GluI	GCNGC	5 cut(s)	339, 342, 345, 759, 762
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	84, 231, 659
HapII	CCGG	2 cut(s)	10, 639
HindIII	AAGCTT	4 cut(s)	248, 315, 426, 824
HinfI	GANTC	3 cut(s)	167, 488, 909
HpaII	CCGG	2 cut(s)	10, 639
HphI	GGTGA	2 cut(s)	609, 824
Hpy166II	GTNNAC	4 cut(s)	237, 309, 517, 815
Hpy188I	TCNGA	6 cut(s)	129, 150, 400, 487, 732, 855
Hpy188III	TCNNGA	5 cut(s)	46, 199, 444, 572, 610
Hpy8I	GTNNAC	4 cut(s)	237, 309, 517, 815
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	341, 423, 698, 723, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	344, 350, 359, 446, 758, 767
HpyF3I	CTNAG	5 cut(s)	204, 486, 766, 822, 883
Kzo9I	GATC	2 cut(s)	124, 727
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	5 cut(s)	325, 353, 356, 745, 773
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	906, 913
MaeIII	GTNAC	3 cut(s)	64, 100, 870
MalI	GATC	2 cut(s)	126, 729
MboI	GATC	2 cut(s)	124, 727
MboII	GAAGA	6 cut(s)	169, 280, 479, 565, 665, 725
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	3 cut(s)	137, 613, 830
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	497, 903
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	5 cut(s)	246, 321, 507, 707, 828
Msp20I	TGGCCA	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	10, 639
MspR9I	CCNGG	4 cut(s)	255, 639, 640, 810
MvaI	CCWGG	2 cut(s)	255, 810
MwoI	GCNNNNNNNGC	6 cut(s)	344, 350, 359, 446, 758, 767
NciI	CCSGG	2 cut(s)	639, 640
NdeII	GATC	2 cut(s)	124, 727
NlaIV	GGNNCC	2 cut(s)	83, 742
PaqCI	CACCTGC	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	340, 343, 346, 760, 763
PleI	GAGTC	2 cut(s)	496, 903
PpsI	GAGTC	2 cut(s)	496, 903
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	253, 808
PspGI	CCWGG	2 cut(s)	253, 808
PspN4I	GGNNCC	2 cut(s)	83, 742
PspPI	GGNCC	2 cut(s)	82, 539
PstI	CTGCAG	2 cut(s)	343, 763
PsuI	RGATCY	1 cut(s)	727
SacI	GAGCTC	1 cut(s)	609
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	246, 321, 507, 707, 828
SatI	GCNGC	5 cut(s)	339, 342, 345, 759, 762
Sau3AI	GATC	2 cut(s)	124, 727
Sau96I	GGNCC	2 cut(s)	82, 539
SchI	GAGTC	2 cut(s)	497, 903
ScrFI	CCNGG	4 cut(s)	255, 639, 640, 810
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	3 cut(s)	309, 339, 759
SinI	GGWCC	1 cut(s)	539
SmaI	CCCGGG	1 cut(s)	640
SmlI	CTYRAG	5 cut(s)	363, 506, 548, 560, 570
SmoI	CTYRAG	5 cut(s)	363, 506, 548, 560, 570
Sse9I	AATT	3 cut(s)	137, 613, 830
SseBI	AGGCCT	1 cut(s)	659
SsiI	CCGC	1 cut(s)	92
SspI	AATATT	2 cut(s)	667, 705
SspMI	CTAG	2 cut(s)	906, 913
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	1 cut(s)	659
StyD4I	CCNGG	4 cut(s)	253, 637, 638, 808
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	137, 613, 830
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	5 cut(s)	246, 321, 507, 707, 828
Tru9I	TTAA	5 cut(s)	246, 321, 507, 707, 828
TseI	GCWGC	5 cut(s)	338, 341, 344, 758, 761
TspDTI	ATGAA	2 cut(s)	480, 726
TspMI	CCCGGG	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	137, 613
XmaI	CCCGGG	1 cut(s)	638
XmiI	GTMKAC	2 cut(s)	236, 308
XspI	CTAG	2 cut(s)	906, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.