Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

18958285 .. 18960489

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTGGCCAGTCTACAGTTGTTAGGCTTCCTGGTCTTGGCACGAAGAGGGTTGGCTTGTTTGGGCTTGAACAATCTGCTTCGTCTACAGAAGCGTTTAAGGGTCTTGGGGAGGCTGCAGTAGCAGTGGCAAAGACTACTGAAGCAAGTGATATTGCTATTGTGCTCGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGTGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGACAATAGGTATAAATCAGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTAAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTCTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACTTGGGAAACTAGCAGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAATATTAAATGAAGGGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCCGCAGCCTCAGCAAGTCCTCCACATTTTATTCACTTGACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAACTAGCATTGGTGGGTGAAGGTCTGACTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTAGCTGTTCAATTGAACTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAAAGGTACATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGAACATTGAGGTCAATTACACAGATGCTGAAGGCAGACTGACTTTGGCAAATGCATTAGTATATGCATCTGGTCGAAATTTCTTAGTGTCATTACTACATTTTGAAGTCCATACTGTACTCTATGACTCAAATACCACTGTGGCAGTTTGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

337

Amino Acids

34.85

Weight (kDa)

8.49

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	2 - 89	3.3e-12	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	126 - 309	1.9e-60	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	2 cut(s)	406, 604
AccI	GTMKAC	2 cut(s)	14, 86
AciI	CCGC	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	7, 534
AcsI	RAATTY	2 cut(s)	391, 934
AcuI	CTGAAG	2 cut(s)	162, 906
AfaI	GTAC	2 cut(s)	774, 975
AfiI	CCNNNNNNNGG	2 cut(s)	38, 180
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	71, 681, 686, 962
AjnI	CCWGG	3 cut(s)	31, 586, 826
Alw21I	GWGCWC	2 cut(s)	168, 387
AlwNI	CAGNNNCTG	2 cut(s)	719, 884
AoxI	GGCC	4 cut(s)	7, 435, 534, 824
ApeKI	GCWGC	5 cut(s)	116, 539, 716, 731, 788
ApoI	RAATTY	2 cut(s)	391, 934
AspS9I	GGNCC	2 cut(s)	317, 668
AsuHPI	GGTGA	3 cut(s)	387, 602, 635
AvaII	GGWCC	2 cut(s)	317, 668
BalI	TGGCCA	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	168, 387
BbvCI	CCTCAGC	1 cut(s)	544
BbvI	GCAGC	5 cut(s)	103, 551, 728, 743, 800
BciT130I	CCWGG	3 cut(s)	33, 588, 828
BfaI	CTAG	3 cut(s)	425, 611, 672
BfmI	CTRYAG	3 cut(s)	15, 87, 117
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	2 cut(s)	406, 604
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	6 cut(s)	117, 537, 540, 717, 732, 789
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	6 cut(s)	118, 538, 541, 718, 733, 790
Bme1390I	CCNGG	3 cut(s)	33, 588, 828
Bme18I	GGWCC	2 cut(s)	317, 668
BmgT120I	GGNCC	2 cut(s)	317, 668
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	33, 588, 828
BmsI	GCATC	3 cut(s)	227, 871, 932
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	544
Bpu1102I	GCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	3 cut(s)	323, 333, 347
BsaJI	CCNNGG	3 cut(s)	174, 586, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 180
Bse1I	ACTGG	2 cut(s)	10, 319
Bse3DI	GCAATG	2 cut(s)	444, 503
BseBI	CCWGG	3 cut(s)	33, 588, 828
BseDI	CCNNGG	3 cut(s)	174, 586, 827
BseLI	CCNNNNNNNGG	2 cut(s)	38, 180
BseMI	GCAATG	2 cut(s)	444, 503
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	10, 319
BseXI	GCAGC	5 cut(s)	103, 551, 728, 743, 800
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	4 cut(s)	9, 437, 536, 826
BsiHKAI	GWGCWC	2 cut(s)	168, 387
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	2 cut(s)	38, 180
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	4 cut(s)	9, 437, 536, 826
Bsp1286I	GDGCHC	2 cut(s)	168, 387
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	4 cut(s)	9, 437, 536, 826
BspCNI	CTCAG	1 cut(s)	557
BspLI	GGNNCC	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	2 cut(s)	406, 604
BspTI	CTTAAG	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	444, 503
BsrI	ACTGG	2 cut(s)	10, 319
BssECI	CCNNGG	3 cut(s)	174, 586, 827
BssMI	GATC	1 cut(s)	505
Bst2UI	CCWGG	3 cut(s)	33, 588, 828
Bst4CI	ACNGT	4 cut(s)	19, 644, 973, 997
Bst6I	CTCTTC	2 cut(s)	41, 426
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	544, 600, 940
BstKTI	GATC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 224, 434, 536, 545, 737
BstNI	CCWGG	3 cut(s)	33, 588, 828
BstSCI	CCNGG	3 cut(s)	31, 586, 826
BstSFI	CTRYAG	3 cut(s)	15, 87, 117
BstV1I	GCAGC	5 cut(s)	103, 551, 728, 743, 800
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	9, 437, 536, 826
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 649, 993
BveI	ACCTGC	2 cut(s)	406, 604
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	2 cut(s)	719, 884
Cfr13I	GGNCC	2 cut(s)	317, 668
Csp6I	GTAC	2 cut(s)	773, 974
CviQI	GTAC	2 cut(s)	773, 974
DdeI	CTNAG	3 cut(s)	544, 600, 940
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	7, 534
Eam1104I	CTCTTC	2 cut(s)	41, 426
EarI	CTCTTC	2 cut(s)	41, 426
Ecl136II	GAGCTC	1 cut(s)	385
Eco147I	AGGCCT	2 cut(s)	437, 826
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	317, 668
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	162, 906
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	31, 586, 826
EcoT22I	ATGCAT	2 cut(s)	913, 925
EcoT38I	GRGCYC	1 cut(s)	387
FaqI	GGGAC	1 cut(s)	845
FblI	GTMKAC	2 cut(s)	14, 86
Fnu4HI	GCNGC	6 cut(s)	117, 537, 540, 717, 732, 789
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	117, 537, 540, 717, 732, 789
FspBI	CTAG	3 cut(s)	425, 611, 672
GluI	GCNGC	6 cut(s)	117, 537, 540, 717, 732, 789
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	9, 437, 536, 826
HindIII	AAGCTT	2 cut(s)	204, 602
HinfI	GANTC	2 cut(s)	266, 983
HphI	GGTGA	3 cut(s)	387, 602, 635
Hpy166II	GTNNAC	4 cut(s)	15, 87, 295, 593
Hpy188I	TCNGA	4 cut(s)	178, 265, 510, 633
Hpy188III	TCNNGA	5 cut(s)	222, 350, 363, 388, 661
Hpy8I	GTNNAC	4 cut(s)	15, 87, 295, 593
HpyAV	CCTTC	5 cut(s)	485, 620, 688, 768, 881
HpyCH4III	ACNGT	4 cut(s)	19, 644, 973, 997
HpyCH4V	TGCA	7 cut(s)	119, 201, 476, 501, 731, 911, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 224, 434, 536, 545, 737
HpyF3I	CTNAG	3 cut(s)	544, 600, 940
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	5 cut(s)	103, 551, 728, 743, 800
LweI	GCATC	3 cut(s)	227, 871, 932
MaeI	CTAG	3 cut(s)	425, 611, 672
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	58, 257, 343, 443
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	168, 387
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	4 cut(s)	391, 681, 871, 934
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	275, 977
Mox20I	TGGCCA	1 cut(s)	9
Mph1103I	ATGCAT	2 cut(s)	913, 925
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	5 cut(s)	99, 285, 485, 606, 1012
Msp20I	TGGCCA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	3 cut(s)	33, 588, 828
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	3 cut(s)	33, 588, 828
MwoI	GCNNNNNNNGC	6 cut(s)	122, 224, 434, 536, 545, 737
NdeII	GATC	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	2 cut(s)	913, 925
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	2 cut(s)	437, 826
PflFI	GACNNNGTC	1 cut(s)	836
PkrI	GCNGC	6 cut(s)	118, 538, 541, 718, 733, 790
PleI	GAGTC	2 cut(s)	274, 977
PpsI	GAGTC	2 cut(s)	274, 977
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	3 cut(s)	31, 586, 826
PspGI	CCWGG	3 cut(s)	31, 586, 826
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	317, 668
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	2 cut(s)	719, 884
PsuI	RGATCY	1 cut(s)	505
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	774, 975
RsaNI	GTAC	2 cut(s)	773, 974
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	99, 285, 485, 606, 1012
SatI	GCNGC	6 cut(s)	117, 537, 540, 717, 732, 789
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	2 cut(s)	317, 668
SchI	GAGTC	2 cut(s)	275, 977
ScrFI	CCNGG	3 cut(s)	33, 588, 828
SduI	GDGCHC	2 cut(s)	168, 387
SfaNI	GCATC	3 cut(s)	227, 871, 932
SfcI	CTRYAG	3 cut(s)	15, 87, 117
SinI	GGWCC	2 cut(s)	317, 668
SmlI	CTYRAG	4 cut(s)	284, 326, 338, 348
SmoI	CTYRAG	4 cut(s)	284, 326, 338, 348
Sse9I	AATT	4 cut(s)	391, 681, 871, 934
SseBI	AGGCCT	2 cut(s)	437, 826
SsiI	CCGC	1 cut(s)	537
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	3 cut(s)	425, 611, 672
SstI	GAGCTC	1 cut(s)	387
StuI	AGGCCT	2 cut(s)	437, 826
StyD4I	CCNGG	3 cut(s)	31, 586, 826
TaaI	ACNGT	4 cut(s)	19, 644, 973, 997
TaqI	TCGA	1 cut(s)	931
TasI	AATT	4 cut(s)	391, 681, 871, 934
TatI	WGTACW	1 cut(s)	973
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	5 cut(s)	99, 285, 485, 606, 1012
Tru9I	TTAA	5 cut(s)	99, 285, 485, 606, 1012
TscAI	CASTG	3 cut(s)	132, 649, 1000
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	5 cut(s)	116, 539, 716, 731, 788
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	4 cut(s)	258, 504, 707, 769
TspRI	CASTG	3 cut(s)	132, 649, 1000
Tth111I	GACNNNGTC	1 cut(s)	836
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	317, 668
XapI	RAATTY	2 cut(s)	391, 934
XmiI	GTMKAC	2 cut(s)	14, 86
XspI	CTAG	3 cut(s)	425, 611, 672
Zsp2I	ATGCAT	2 cut(s)	913, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.