Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

34977891 .. 34980493

Gene Structure 2603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCACACAATTGCTCACACCACTCTCGGCCTCACTCAGATTTCTCCGGTCTTTGAAGCCCCAAAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGCAGGTGTTGGTGTTACGCAGAAGGATTTGGCGAAAGATCAGAACTCGAAATTCGAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGAGCAGTTTTGGGTATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACAGTCTTGGTCTTGGAATTGGACCTGAACTTGAGAAGAAGCTCAAGAATGCTCAAGATGTTGCTTCTGTAATAATACTTGGGAAAGAGCTCACAAATTCACCTGCCAATGTTCTCACACCTAGGAAACTAGCAGAAGAGGCCACAAACATTGCTTCCTTATATAGTGATGTTCTACAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCAATTGCTCGCAATAGGCTTGGAAATCTGGTTTCTTTCACAGAAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTATGGCCGCAGCCTCAGCAAATCCTCCACATTTTATTCACCTAACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATGGGTGGGTAAAGGTCTGACTTTTGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

229

Amino Acids

25.0

Weight (kDa)

8.89

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	120 - 228	2.7e-15	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	107, 388
Acc36I	ACCTGC	3 cut(s)	107, 388, 646
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	164, 373
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	59, 184, 461, 494
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	6 cut(s)	70, 190, 263, 319, 367, 646
AluI	AGCT	6 cut(s)	70, 190, 263, 319, 367, 646
Alw21I	GWGCWC	1 cut(s)	369
AoxI	GGCC	3 cut(s)	31, 417, 576
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	164, 373
AspA2I	CCTAGG	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	369, 602, 644
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	630
BfaI	CTAG	2 cut(s)	399, 407
BfmI	CTRYAG	1 cut(s)	452
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	3 cut(s)	107, 388, 646
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	2 cut(s)	579, 582
BlnI	CCTAGG	1 cut(s)	398
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	2 cut(s)	580, 583
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	586
Bpu1102I	GCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	3 cut(s)	305, 315, 329
BsaJI	CCNNGG	2 cut(s)	398, 628
BsaWI	WCCGGW	2 cut(s)	49, 486
Bse3DI	GCAATG	2 cut(s)	426, 545
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	398, 628
BseMI	GCAATG	2 cut(s)	426, 545
BseMII	CTCAG	3 cut(s)	53, 237, 600
BseXI	GCAGC	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	33, 419, 578
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	50, 487
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	33, 419, 578
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	151, 547
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	3 cut(s)	33, 419, 578
BspCNI	CTCAG	3 cut(s)	52, 238, 599
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	3 cut(s)	107, 388, 646
BspT104I	TTCGAA	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	426, 545
BssECI	CCNNGG	2 cut(s)	398, 628
BssMI	GATC	2 cut(s)	151, 547
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	4 cut(s)	39, 246, 586, 642
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	154, 550
BstMBI	GATC	2 cut(s)	151, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 578, 587
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	593
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	33, 419, 578
BtuMI	TCGCGA	1 cut(s)	80
BveI	ACCTGC	3 cut(s)	107, 388, 646
Cac8I	GCNNGC	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	1 cut(s)	657
DdeI	CTNAG	4 cut(s)	39, 246, 586, 642
DpnI	GATC	2 cut(s)	153, 549
DpnII	GATC	2 cut(s)	151, 547
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	1 cut(s)	660
FaiI	YATR	8 cut(s)	221, 223, 225, 240, 439, 441, 575, 658
FatI	CATG	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	579, 582
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	579, 582
FspBI	CTAG	2 cut(s)	399, 407
GluI	GCNGC	2 cut(s)	579, 582
HaeIII	GGCC	3 cut(s)	33, 419, 578
HapII	CCGG	2 cut(s)	50, 487
Hin1II	CATG	1 cut(s)	660
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	2 cut(s)	194, 248
HpaII	CCGG	2 cut(s)	50, 487
HphI	GGTGA	3 cut(s)	369, 602, 644
Hpy166II	GTNNAC	2 cut(s)	277, 635
Hpy188I	TCNGA	6 cut(s)	42, 156, 177, 247, 552, 675
Hpy188III	TCNNGA	3 cut(s)	79, 322, 332
Hpy8I	GTNNAC	2 cut(s)	277, 635
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 578, 587
HpyF3I	CTNAG	4 cut(s)	39, 246, 586, 642
Hsp92II	CATG	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	151, 547
LmnI	GCTCC	2 cut(s)	206, 471
Lsp1109I	GCAGC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	399, 407
MaeIII	GTNAC	2 cut(s)	97, 127
MalI	GATC	2 cut(s)	153, 549
MboI	GATC	2 cut(s)	151, 547
MboII	GAAGA	4 cut(s)	196, 239, 325, 425
MfeI	CAATTG	2 cut(s)	12, 494
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	7 cut(s)	12, 164, 294, 373, 461, 494, 650
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	44, 409, 595, 606
MseI	TTAA	2 cut(s)	267, 648
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	50, 487
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	2 cut(s)	12, 494
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	416, 578, 587
NdeII	GATC	2 cut(s)	151, 547
NlaIII	CATG	1 cut(s)	660
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	9
NruI	TCGCGA	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	168
PaqCI	CACCTGC	2 cut(s)	107, 388
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	580, 583
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	547
RruI	TCGCGA	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	267, 648
SatI	GCNGC	2 cut(s)	579, 582
Sau3AI	GATC	2 cut(s)	151, 547
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	4 cut(s)	266, 308, 320, 330
SmoI	CTYRAG	4 cut(s)	266, 308, 320, 330
Sse9I	AATT	7 cut(s)	12, 164, 294, 373, 461, 494, 650
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	399, 407
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	161, 168
TasI	AATT	7 cut(s)	12, 164, 294, 373, 461, 494, 650
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	267, 648
Tru9I	TTAA	2 cut(s)	267, 648
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	164, 373
XmaJI	CCTAGG	1 cut(s)	398
XspI	CTAG	2 cut(s)	399, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.