Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

26801014 .. 26801773

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1251700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGATGGCAGATGTTACTTCTGGAATAATTTTTGGGAAAGAGCTAGTAAATTCACCTGCCAATGTTCTTACACCGGGGAAACTAGCTGAAGAGGCCTCAAAGATTGCCTCCACATACAGTGATGTATCTGCAAACATATTAAATGAAGAGCAATGCAAAAAATTGAAAAAAATGGGTTCTTATTTGGCTGTTGCCGCAGCCTCAACAAATCCCCCGCATTTTATTCACTTGATTTACAAACCCCCTGGCGGACCTGCTAAGGTCAAATTAGGGTTGGTTGGTAAAGGTCTTACCTTTGACAGCGGTGGCTACAACATCAAGACAGGGCCTGGCTGTTCAATTGAACAAATGAAATTTGATATGGGAGGTTCAGCAGCCGTATTAGGTGCAGCAAAAGCCATTGCTCAAATCAAACCAACTGGTGTAGAGGTTCATTTCATTGTTGCAGCTTGCGAGAATATGATGAGTGGAACAGGTATGAGACCTGGAGACATTGTGACAGCATCAAATGGAAAGACAATTGAGGTCAATAACACTGATGCTGAAGGTGGACTTACTCTGGCTGACGCGTTGGTATATGCTTGTAACCAAGGTTTGCTTTTGGACCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

206

Amino Acids

21.16

Weight (kDa)

6.82

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	13 - 197	1.6e-66	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	2 cut(s)	67, 265
AccII	CGCG	1 cut(s)	572
AciI	CCGC	4 cut(s)	198, 218, 252, 306
AcsI	RAATTY	2 cut(s)	52, 356
AcuI	CTGAAG	2 cut(s)	111, 567
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	169, 342, 347
AjnI	CCWGG	3 cut(s)	247, 331, 487
AluBI	AGCT	3 cut(s)	46, 89, 452
AluI	AGCT	3 cut(s)	46, 89, 452
Alw26I	GTCTC	2 cut(s)	478, 486
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	96, 329
ApeKI	GCWGC	4 cut(s)	200, 377, 392, 449
ApoI	RAATTY	2 cut(s)	52, 356
AspS9I	GGNCC	3 cut(s)	254, 329, 607
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	254, 607
BbvI	GCAGC	4 cut(s)	212, 389, 404, 461
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	3 cut(s)	249, 333, 489
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	478, 486
BfaI	CTAG	2 cut(s)	47, 86
BfuAI	ACCTGC	2 cut(s)	67, 265
BisI	GCNGC	5 cut(s)	198, 201, 378, 393, 450
BlsI	GCNGC	5 cut(s)	199, 202, 379, 394, 451
Bme1390I	CCNGG	4 cut(s)	78, 249, 333, 489
Bme18I	GGWCC	2 cut(s)	254, 607
BmgT120I	GGNCC	3 cut(s)	254, 329, 607
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	4 cut(s)	78, 249, 333, 489
BmsI	GCATC	2 cut(s)	515, 532
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	77, 247, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	161, 402
BseBI	CCWGG	3 cut(s)	249, 333, 489
BseDI	CCNNGG	3 cut(s)	77, 247, 592
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	2 cut(s)	161, 402
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	4 cut(s)	212, 389, 404, 461
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	98, 331
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	478, 486
BsnI	GGCC	2 cut(s)	98, 331
Bso31I	GGTCTC	1 cut(s)	478
BspACI	CCGC	4 cut(s)	198, 218, 252, 306
BspANI	GGCC	2 cut(s)	98, 331
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	1 cut(s)	609
BspMI	ACCTGC	2 cut(s)	67, 265
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	161, 402
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	77, 247, 592
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	3 cut(s)	249, 333, 489
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	87, 144
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	261, 612
BstFNI	CGCG	1 cut(s)	572
BstMAI	GTCTC	2 cut(s)	478, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 197, 398
BstNI	CCWGG	3 cut(s)	249, 333, 489
BstSCI	CCNGG	4 cut(s)	76, 247, 331, 487
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	212, 389, 404, 461
BsuRI	GGCC	2 cut(s)	98, 331
BtsIMutI	CAGTG	2 cut(s)	127, 537
BveI	ACCTGC	2 cut(s)	67, 265
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	254, 329, 607
CseI	GACGC	1 cut(s)	578
DdeI	CTNAG	2 cut(s)	261, 612
Eam1104I	CTCTTC	2 cut(s)	87, 144
EarI	CTCTTC	2 cut(s)	87, 144
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	254, 607
Eco57I	CTGAAG	2 cut(s)	111, 567
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	3 cut(s)	247, 331, 487
EcoT14I	CCWWGG	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	592
FaiI	YATR	7 cut(s)	118, 140, 365, 464, 482, 580, 582
FalI	AAGNNNNNCTT	4 cut(s)	540, 572, 585, 617
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	198, 201, 378, 393, 450
Fsp4HI	GCNGC	5 cut(s)	198, 201, 378, 393, 450
FspBI	CTAG	2 cut(s)	47, 86
GluI	GCNGC	5 cut(s)	198, 201, 378, 393, 450
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	98, 331
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188III	TCNNGA	2 cut(s)	24, 322
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	1 cut(s)	542
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	134, 159, 392, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 197, 398
HpyF3I	CTNAG	2 cut(s)	261, 612
LguI	GCTCTTC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	212, 389, 404, 461
LweI	GCATC	2 cut(s)	515, 532
MaeI	CTAG	2 cut(s)	47, 86
MaeIII	GTNAC	3 cut(s)	16, 499, 587
MboII	GAAGA	3 cut(s)	16, 104, 161
MfeI	CAATTG	2 cut(s)	342, 522
MluCI	AATT	7 cut(s)	30, 52, 164, 269, 342, 356, 522
MluI	ACGCGT	1 cut(s)	570
MnlI	CCTC	7 cut(s)	88, 109, 121, 214, 362, 424, 520
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	4 cut(s)	78, 249, 333, 489
MunI	CAATTG	2 cut(s)	342, 522
MvaI	CCWGG	3 cut(s)	249, 333, 489
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	95, 197, 398
NciI	CCSGG	1 cut(s)	78
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	5 cut(s)	199, 202, 379, 394, 451
Psp6I	CCWGG	3 cut(s)	247, 331, 487
PspGI	CCWGG	3 cut(s)	247, 331, 487
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	3 cut(s)	254, 329, 607
PstNI	CAGNNNCTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	5 cut(s)	198, 201, 378, 393, 450
Sau96I	GGNCC	3 cut(s)	254, 329, 607
ScrFI	CCNGG	4 cut(s)	78, 249, 333, 489
SfaNI	GCATC	2 cut(s)	515, 532
SinI	GGWCC	2 cut(s)	254, 607
Sse9I	AATT	7 cut(s)	30, 52, 164, 269, 342, 356, 522
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	4 cut(s)	198, 218, 252, 306
SspMI	CTAG	2 cut(s)	47, 86
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	4 cut(s)	76, 247, 331, 487
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	7 cut(s)	30, 52, 164, 269, 342, 356, 522
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	127, 544
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	4 cut(s)	200, 377, 392, 449
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	5 cut(s)	17, 162, 368, 425, 430
TspRI	CASTG	2 cut(s)	127, 544
VpaK11BI	GGWCC	2 cut(s)	254, 607
XapI	RAATTY	2 cut(s)	52, 356
XspI	CTAG	2 cut(s)	47, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.