Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

13802362 .. 13802889

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAATTTGATATGGGAGGTTCAGCAGCCGTATTAGGTGCAGCAAAAGCCATTGCTCAAATCAAACCAGTTGGTGTAGAGGTTCATTTCATTGTTGCAGCTTGCGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGACATTGTGACAGCATCAAATGGAAAGACAATTGAGGTCAATAACACTGATGCTGAAGGTAGACTTACTCTGGCTGACGCATTGGTATATGCTTGTAACCAAGGTGTTGATAAGATTGTTGACCTAGCAACATTCACCGGTGCTTGCATAGTTGCTCTTGGACCCTCAATAGCAAGTGTCTTCACACCAAGTGATGACTTGGCGAATGAGGTGTTTACAGTTTCAGAAATCAGTGGGGAGAAATTTTGGAGGTTGCCAATGGAGGAGAGTTATTGGGAATCAATGAAATCTGGAATAGCCGATATGCTCAACACCGGTGCTCGTCAAGGTGGTTCAATAACTGCTGCTCTCTTCTTGAAGCAGTTCGTTGATGAAAAAGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

176

Amino Acids

18.41

Weight (kDa)

4.58

Isoelectric Point (pI)

19.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 172	3e-69	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	5, 383
AcuI	CTGAAG	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	332
AgeI	ACCGGT	2 cut(s)	278, 455
AgsI	TTSAA	2 cut(s)	477, 499
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	26, 41, 98, 485
ApoI	RAATTY	2 cut(s)	5, 383
AsiGI	ACCGGT	2 cut(s)	278, 455
Asp700I	GAANNNNTTC	2 cut(s)	503, 519
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	4 cut(s)	38, 53, 110, 472
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	4 cut(s)	27, 42, 99, 486
BlsI	GCNGC	4 cut(s)	28, 43, 100, 487
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	164, 181
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	2 cut(s)	278, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	2 cut(s)	278, 455
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	4 cut(s)	38, 53, 110, 472
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	136
BshTI	ACCGGT	2 cut(s)	278, 455
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	279, 456
BsmAI	GTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	2 cut(s)	278, 455
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	2 cut(s)	278, 455
BssECI	CCNNGG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	103, 286
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	38, 53, 110, 472
BstV2I	GAAGAC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	186, 379
Cac8I	GCNNGC	2 cut(s)	103, 286
Cfr10I	RCCGGY	2 cut(s)	278, 455
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	227
CspAI	ACCGGT	2 cut(s)	278, 455
CviJI	RGCY	6 cut(s)	29, 50, 101, 136, 215, 440
CviKI_1	RGCY	6 cut(s)	29, 50, 101, 136, 215, 440
DraIII	CACNNNGTG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaiI	YATR	7 cut(s)	14, 113, 131, 229, 231, 290, 446
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	27, 42, 99, 486
Fsp4HI	GCNGC	4 cut(s)	27, 42, 99, 486
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	27, 42, 99, 486
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	279, 456
HgaI	GACGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	279, 456
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	203, 262, 357
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	2 cut(s)	432, 496
Hpy8I	GTNNAC	3 cut(s)	203, 262, 357
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	41, 98, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	81, 111, 123, 150, 197, 292, 417, 469
Lsp1109I	GCAGC	4 cut(s)	38, 53, 110, 472
LweI	GCATC	2 cut(s)	164, 181
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	148, 236
MboII	GAAGA	2 cut(s)	313, 484
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	3 cut(s)	5, 171, 383
MnlI	CCTC	8 cut(s)	11, 73, 126, 169, 316, 343, 384, 397
MroXI	GAANNNNTTC	2 cut(s)	503, 519
MspI	CCGG	2 cut(s)	279, 456
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	503, 519
PfeI	GAWTC	1 cut(s)	419
PinAI	ACCGGT	2 cut(s)	278, 455
PkrI	GCNGC	4 cut(s)	28, 43, 100, 487
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	302
SatI	GCNGC	4 cut(s)	27, 42, 99, 486
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	164, 181
SgrAI	CRCCGGYG	2 cut(s)	278, 455
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	3 cut(s)	5, 171, 383
SseBI	AGGCCT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	361
TasI	AATT	3 cut(s)	5, 171, 383
TfiI	GAWTC	1 cut(s)	419
TscAI	CASTG	2 cut(s)	193, 379
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	4 cut(s)	26, 41, 98, 485
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	5 cut(s)	17, 74, 79, 440, 528
TspRI	CASTG	2 cut(s)	193, 379
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	5, 383
XmiI	GTMKAC	1 cut(s)	202
XmnI	GAANNNNTTC	2 cut(s)	503, 519
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.