Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

890846 .. 895221

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGTGGCCAGTGTCGTGTCATTGGCTTCTTCCCTTATCGCAGTCACTTCATCTTCTTCACCTTCATATTCTTCTTCGTTTTTAACCAAACTAAGGCACGCGCCGAGTCTGCGACTTTGTTTTGCAGTCTCGCCCTTGAGAGTGAAGAAGCACATGGCTCACACTATCGCTCGCGCCACTCTCGGCCTCACTCAGATTTCTCCGGCCTTTGAAGCCCCTAAGCTCACTTTCGCGACGAAAGAGATTGATGTATCGGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGGAATTCGAAAATCCGATTTTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCTTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAGCAGCTAAGACTGCTCAAGCAAGTGATATTGCGATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCACAGCTTCTGCAATAGCATCTGGAGCTGTTTTGGGGATATATGAAGACAACAGGTATAAATCTGAGTCAAAAAAACCAGCTCTCAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTAGAGAAGAAGCTCAAATATGCTCAAGATGTTGCTGCTGGAATAATACTTGGGAAAGAGCTCGTGAATTCACCTGCCAATGTTCTCACACCTGGGAAACTAGCAGAAGAGGCCTCAAATATTGCTTCCTTATACAGTGATGTTCTTTCTGCAAAGATATTGAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCTACAAACCCCCTGGTGGACCTGCTAAACTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGTTTGATATGGGAGGTTCAGCTGCTGTGTTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATTAGTGGAACAGGTATGAGGCCTGGAGACATTGTCACAGCTTCCAATGGAAAGACCATTGAGGTACAGTTTGTGTGGTGGTCAGAAATGCACATCATATTATTGATGAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

442

Amino Acids

45.94

Weight (kDa)

8.54

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	93 - 225	9e-27	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	262 - 427	8.6e-54	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	814
Acc36I	ACCTGC	3 cut(s)	279, 814, 1012
AccI	GTMKAC	1 cut(s)	422
AccII	CGCG	3 cut(s)	101, 174, 233
AciI	CCGC	1 cut(s)	278
AcoI	YGGCCR	2 cut(s)	6, 415
AcsI	RAATTY	2 cut(s)	323, 799
AfaI	GTAC	1 cut(s)	1278
AfiI	CCNNNNNNNGG	6 cut(s)	93, 277, 424, 446, 588, 998
AgsI	TTSAA	4 cut(s)	212, 343, 895, 1089
AjnI	CCWGG	5 cut(s)	439, 823, 994, 1078, 1234
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	3 cut(s)	133, 388, 1233
AlwNI	CAGNNNCTG	3 cut(s)	617, 1079, 1127
AoxI	GGCC	6 cut(s)	6, 184, 204, 415, 843, 1232
ApoI	RAATTY	2 cut(s)	323, 799
AspLEI	GCGC	2 cut(s)	103, 176
AspS9I	GGNCC	4 cut(s)	268, 725, 1001, 1076
AsuHPI	GGTGA	2 cut(s)	51, 795
AsuII	TTCGAA	1 cut(s)	327
AvaII	GGWCC	4 cut(s)	268, 725, 1001, 1076
BalI	TGGCCA	2 cut(s)	8, 417
BanII	GRGCYC	1 cut(s)	795
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	795
BbvCI	CCTCAGC	2 cut(s)	378, 952
BciT130I	CCWGG	5 cut(s)	441, 825, 996, 1080, 1236
BcoDI	GTCTC	3 cut(s)	133, 388, 1233
BfaI	CTAG	2 cut(s)	734, 833
BfmI	CTRYAG	3 cut(s)	495, 525, 945
BfuAI	ACCTGC	3 cut(s)	279, 814, 1012
BglII	AGATCT	1 cut(s)	913
Bme1390I	CCNGG	5 cut(s)	441, 825, 996, 1080, 1236
Bme18I	GGWCC	4 cut(s)	268, 725, 1001, 1076
BmgT120I	GGNCC	4 cut(s)	268, 725, 1001, 1076
BmiI	GGNNCC	2 cut(s)	269, 928
BmrFI	CCNGG	5 cut(s)	441, 825, 996, 1080, 1236
BmsI	GCATC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	651, 1257
Bpu10I	CCTNAGC	3 cut(s)	219, 378, 952
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	4 cut(s)	157, 534, 677, 741
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	582, 824, 994
BsaXI	ACNNNNNCTCC	2 cut(s)	1230, 1260
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 277, 424, 446, 588, 998
Bse1I	ACTGG	3 cut(s)	9, 418, 727
Bse3DI	GCAATG	1 cut(s)	911
BseBI	CCWGG	5 cut(s)	441, 825, 996, 1080, 1236
BseDI	CCNNGG	3 cut(s)	582, 824, 994
BseLI	CCNNNNNNNGG	6 cut(s)	93, 277, 424, 446, 588, 998
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	5 cut(s)	206, 369, 381, 663, 966
BseNI	ACTGG	3 cut(s)	9, 418, 727
BseRI	GAGGAG	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	3 cut(s)	101, 174, 233
BshFI	GGCC	6 cut(s)	8, 186, 206, 417, 845, 1234
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	6 cut(s)	93, 277, 424, 446, 588, 998
BsmAI	GTCTC	3 cut(s)	133, 388, 1233
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	6 cut(s)	8, 186, 206, 417, 845, 1234
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	310, 913
Bsp68I	TCGCGA	1 cut(s)	233
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	6 cut(s)	8, 186, 206, 417, 845, 1234
BspCNI	CTCAG	5 cut(s)	205, 370, 382, 664, 965
BspFNI	CGCG	3 cut(s)	101, 174, 233
BspLI	GGNNCC	2 cut(s)	269, 928
BspMAI	CTGCAG	2 cut(s)	529, 949
BspMI	ACCTGC	3 cut(s)	279, 814, 1012
BspQI	GCTCTTC	1 cut(s)	894
BspT104I	TTCGAA	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	3 cut(s)	9, 418, 727
BssECI	CCNNGG	3 cut(s)	582, 824, 994
BssMI	GATC	2 cut(s)	310, 913
BssSI	CACGAG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	5 cut(s)	441, 825, 996, 1080, 1236
Bst4CI	ACNGT	4 cut(s)	427, 869, 1052, 1281
Bst6I	CTCTTC	3 cut(s)	449, 834, 894
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	4 cut(s)	99, 172, 276, 576
BstDEI	CTNAG	8 cut(s)	92, 192, 219, 378, 390, 540, 672, 952
BstFNI	CGCG	3 cut(s)	101, 174, 233
BstHHI	GCGC	2 cut(s)	103, 176
BstKTI	GATC	2 cut(s)	313, 916
BstMAI	GTCTC	3 cut(s)	133, 388, 1233
BstMBI	GATC	2 cut(s)	310, 913
BstNI	CCWGG	5 cut(s)	441, 825, 996, 1080, 1236
BstSCI	CCNGG	5 cut(s)	439, 823, 994, 1078, 1234
BstSFI	CTRYAG	3 cut(s)	495, 525, 945
BstUI	CGCG	3 cut(s)	101, 174, 233
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	6 cut(s)	8, 186, 206, 417, 845, 1234
BtsIMutI	CAGTG	3 cut(s)	16, 874, 1057
BtuMI	TCGCGA	1 cut(s)	233
BveI	ACCTGC	3 cut(s)	279, 814, 1012
Cac8I	GCNNGC	4 cut(s)	99, 172, 276, 576
CaiI	CAGNNNCTG	3 cut(s)	617, 1079, 1127
CfoI	GCGC	2 cut(s)	103, 176
Cfr13I	GGNCC	4 cut(s)	268, 725, 1001, 1076
Csp6I	GTAC	1 cut(s)	1277
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	1 cut(s)	1277
DdeI	CTNAG	8 cut(s)	92, 192, 219, 378, 390, 540, 672, 952
DpnI	GATC	2 cut(s)	312, 915
DpnII	GATC	2 cut(s)	310, 913
EaeI	YGGCCR	2 cut(s)	6, 415
Eam1104I	CTCTTC	3 cut(s)	449, 834, 894
EarI	CTCTTC	3 cut(s)	449, 834, 894
Ecl136II	GAGCTC	1 cut(s)	793
Eco147I	AGGCCT	2 cut(s)	845, 1234
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	4 cut(s)	268, 725, 1001, 1076
Eco53kI	GAGCTC	1 cut(s)	793
EcoICRI	GAGCTC	1 cut(s)	793
EcoO109I	RGGNCCY	2 cut(s)	268, 1076
EcoRI	GAATTC	2 cut(s)	323, 799
EcoRII	CCWGG	5 cut(s)	439, 823, 994, 1078, 1234
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	795
FspBI	CTAG	2 cut(s)	734, 833
GlaI	GCGC	2 cut(s)	102, 175
GsuI	CTGGAG	2 cut(s)	651, 1257
HaeIII	GGCC	6 cut(s)	8, 186, 206, 417, 845, 1234
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	2 cut(s)	103, 176
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	2 cut(s)	101, 174
HinP1I	GCGC	2 cut(s)	101, 174
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	106, 353, 674
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	51, 795
Hpy166II	GTNNAC	3 cut(s)	423, 703, 1001
Hpy188III	TCNNGA	6 cut(s)	232, 385, 630, 758, 796, 1069
Hpy8I	GTNNAC	3 cut(s)	423, 703, 1001
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	72, 289, 1176
HpyCH4III	ACNGT	4 cut(s)	427, 869, 1052, 1281
HpyCH4V	TGCA	9 cut(s)	125, 527, 609, 620, 884, 909, 947, 1139, 1303
HpyF3I	CTNAG	8 cut(s)	92, 192, 219, 378, 390, 540, 672, 952
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	2 cut(s)	101, 174
Kzo9I	GATC	2 cut(s)	310, 913
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	1 cut(s)	632
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	2 cut(s)	734, 833
MaeIII	GTNAC	3 cut(s)	43, 286, 1246
MalI	GATC	2 cut(s)	312, 915
MboI	GATC	2 cut(s)	310, 913
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	2 cut(s)	8, 417
MluCI	AATT	4 cut(s)	323, 799, 1016, 1089
MluNI	TGGCCA	2 cut(s)	8, 417
MlyI	GAGTC	2 cut(s)	115, 683
Mox20I	TGGCCA	2 cut(s)	8, 417
MscI	TGGCCA	2 cut(s)	8, 417
MseI	TTAA	3 cut(s)	83, 507, 1014
Msp20I	TGGCCA	2 cut(s)	8, 417
MspA1I	CMGCKG	1 cut(s)	1124
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	5 cut(s)	441, 825, 996, 1080, 1236
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	5 cut(s)	441, 825, 996, 1080, 1236
MvnI	CGCG	3 cut(s)	101, 174, 233
NdeII	GATC	2 cut(s)	310, 913
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	269, 928
NmeAIII	GCCGAG	2 cut(s)	129, 162
NmuCI	GTSAC	2 cut(s)	43, 1246
NruI	TCGCGA	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	814
PceI	AGGCCT	2 cut(s)	845, 1234
PciSI	GCTCTTC	1 cut(s)	894
PfeI	GAWTC	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	1244
PleI	GAGTC	2 cut(s)	114, 682
PpsI	GAGTC	2 cut(s)	114, 682
PpuMI	RGGWCCY	2 cut(s)	268, 1076
Psp124BI	GAGCTC	1 cut(s)	795
Psp5II	RGGWCCY	2 cut(s)	268, 1076
Psp6I	CCWGG	5 cut(s)	439, 823, 994, 1078, 1234
PspGI	CCWGG	5 cut(s)	439, 823, 994, 1078, 1234
PspN4I	GGNNCC	2 cut(s)	269, 928
PspPI	GGNCC	4 cut(s)	268, 725, 1001, 1076
PspPPI	RGGWCCY	2 cut(s)	268, 1076
PstI	CTGCAG	2 cut(s)	529, 949
PstNI	CAGNNNCTG	3 cut(s)	617, 1079, 1127
PsuI	RGATCY	1 cut(s)	913
PsyI	GACNNNGTC	1 cut(s)	1244
PvuII	CAGCTG	1 cut(s)	1124
RruI	TCGCGA	1 cut(s)	233
RsaI	GTAC	1 cut(s)	1278
RsaNI	GTAC	1 cut(s)	1277
SacI	GAGCTC	1 cut(s)	795
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	3 cut(s)	83, 507, 1014
Sau3AI	GATC	2 cut(s)	310, 913
Sau96I	GGNCC	4 cut(s)	268, 725, 1001, 1076
SchI	GAGTC	2 cut(s)	115, 683
ScrFI	CCNGG	5 cut(s)	441, 825, 996, 1080, 1236
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	3 cut(s)	495, 525, 945
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	4 cut(s)	268, 725, 1001, 1076
SmlI	CTYRAG	4 cut(s)	136, 549, 692, 756
SmoI	CTYRAG	4 cut(s)	136, 549, 692, 756
Sse9I	AATT	4 cut(s)	323, 799, 1016, 1089
SseBI	AGGCCT	2 cut(s)	845, 1234
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	734, 833
SstI	GAGCTC	1 cut(s)	795
StuI	AGGCCT	2 cut(s)	845, 1234
StyD4I	CCNGG	5 cut(s)	439, 823, 994, 1078, 1234
TaaI	ACNGT	4 cut(s)	427, 869, 1052, 1281
TaqI	TCGA	3 cut(s)	327, 386, 452
TasI	AATT	4 cut(s)	323, 799, 1016, 1089
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	83, 507, 1014
Tru9I	TTAA	3 cut(s)	83, 507, 1014
TscAI	CASTG	3 cut(s)	16, 874, 1057
TseFI	GTSAC	2 cut(s)	43, 1246
Tsp45I	GTSAC	2 cut(s)	43, 1246
TspDTI	ATGAA	7 cut(s)	39, 54, 666, 912, 1115, 1172, 1177
TspRI	CASTG	3 cut(s)	16, 874, 1057
Tth111I	GACNNNGTC	1 cut(s)	1244
VpaK11BI	GGWCC	4 cut(s)	268, 725, 1001, 1076
XapI	RAATTY	2 cut(s)	323, 799
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	734, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.