Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

11677348 .. 11680189

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAGCTCACTTTCACGACGAAAGAGATTGATGTAACAGAATGGAAAGGGGGCCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTTGAAAATCCGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGATGTCTTGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACTGTTGTTAAGCTTCCTGGTCTTGGCTTGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAATGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGGATATATGAAGATAATAAGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTTTGGAATAATACTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCCGGGAAACTAACAGAAGAGGCCTCAAATATTGCTTCCTTATATAGTGATGTTCTATCTGCAAAAATATTAAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCAACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGATAGGTGGTTACAGATTGACTTAGAACAATGTATTTTTTACCCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

294

Amino Acids

31.05

Weight (kDa)

7.57

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	21 - 153	4e-25	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	190 - 278	2.6e-18	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	2 cut(s)	598, 796
AccI	GTMKAC	2 cut(s)	206, 278
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	107, 583
AfiI	CCNNNNNNNGG	3 cut(s)	61, 230, 372
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	113, 127, 238
AjnI	CCWGG	2 cut(s)	223, 778
Alw21I	GWGCWC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	3 cut(s)	52, 199, 627
ApeKI	GCWGC	5 cut(s)	308, 311, 314, 728, 731
ApoI	RAATTY	2 cut(s)	107, 583
AspS9I	GGNCC	2 cut(s)	52, 509
AsuC2I	CCSGG	2 cut(s)	609, 610
AsuHPI	GGTGA	2 cut(s)	579, 794
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	736
BbvI	GCAGC	5 cut(s)	295, 323, 326, 715, 743
BciT130I	CCWGG	2 cut(s)	225, 780
BcnI	CCSGG	2 cut(s)	609, 610
BfaI	CTAG	2 cut(s)	876, 883
BfmI	CTRYAG	3 cut(s)	279, 309, 729
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	2 cut(s)	598, 796
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	5 cut(s)	309, 312, 315, 729, 732
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	5 cut(s)	310, 313, 316, 730, 733
Bme1390I	CCNGG	4 cut(s)	225, 609, 610, 780
Bme18I	GGWCC	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	52, 509
BmiI	GGNNCC	2 cut(s)	53, 712
BmrFI	CCNGG	4 cut(s)	225, 609, 610, 780
BmsI	GCATC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	736
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	4 cut(s)	318, 515, 525, 539
BpuMI	CCSGG	2 cut(s)	609, 610
BsaJI	CCNNGG	3 cut(s)	366, 608, 778
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 230, 372
Bse1I	ACTGG	2 cut(s)	202, 511
Bse3DI	GCAATG	2 cut(s)	324, 695
BseBI	CCWGG	2 cut(s)	225, 780
BseDI	CCNNGG	3 cut(s)	366, 608, 778
BseLI	CCNNNNNNNGG	3 cut(s)	61, 230, 372
BseMI	GCAATG	2 cut(s)	324, 695
BseMII	CTCAG	3 cut(s)	165, 447, 750
BseNI	ACTGG	2 cut(s)	202, 511
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	5 cut(s)	295, 323, 326, 715, 743
BshFI	GGCC	3 cut(s)	54, 201, 629
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	61, 230, 372
BsnI	GGCC	3 cut(s)	54, 201, 629
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	94, 697
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	3 cut(s)	54, 201, 629
BspCNI	CTCAG	3 cut(s)	166, 448, 749
BspLI	GGNNCC	2 cut(s)	53, 712
BspMAI	CTGCAG	2 cut(s)	313, 733
BspMI	ACCTGC	2 cut(s)	598, 796
BspQI	GCTCTTC	1 cut(s)	678
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	324, 695
BsrI	ACTGG	2 cut(s)	202, 511
BssECI	CCNNGG	3 cut(s)	366, 608, 778
BssMI	GATC	2 cut(s)	94, 697
Bst2UI	CCWGG	2 cut(s)	225, 780
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	3 cut(s)	233, 618, 678
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	56, 60, 360
BstDEI	CTNAG	5 cut(s)	174, 456, 736, 792, 853
BstKTI	GATC	2 cut(s)	97, 700
BstMBI	GATC	2 cut(s)	94, 697
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 320, 329, 416, 728, 737
BstNI	CCWGG	2 cut(s)	225, 780
BstSCI	CCNGG	4 cut(s)	223, 607, 608, 778
BstSFI	CTRYAG	3 cut(s)	279, 309, 729
BstV1I	GCAGC	5 cut(s)	295, 323, 326, 715, 743
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	54, 201, 629
BveI	ACCTGC	2 cut(s)	598, 796
Cac8I	GCNNGC	3 cut(s)	56, 60, 360
Cfr13I	GGNCC	2 cut(s)	52, 509
Cfr9I	CCCGGG	1 cut(s)	608
DdeI	CTNAG	5 cut(s)	174, 456, 736, 792, 853
DpnI	GATC	2 cut(s)	96, 699
DpnII	GATC	2 cut(s)	94, 697
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	233, 618, 678
EarI	CTCTTC	3 cut(s)	233, 618, 678
Ecl136II	GAGCTC	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	223, 778
EcoT38I	GRGCYC	1 cut(s)	579
FaiI	YATR	6 cut(s)	433, 435, 450, 537, 649, 651
FblI	GTMKAC	2 cut(s)	206, 278
Fnu4HI	GCNGC	5 cut(s)	309, 312, 315, 729, 732
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	5 cut(s)	309, 312, 315, 729, 732
FspBI	CTAG	2 cut(s)	876, 883
GluI	GCNGC	5 cut(s)	309, 312, 315, 729, 732
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	54, 201, 629
HapII	CCGG	1 cut(s)	609
HindIII	AAGCTT	4 cut(s)	218, 285, 396, 794
HinfI	GANTC	3 cut(s)	137, 458, 879
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	2 cut(s)	579, 794
Hpy166II	GTNNAC	4 cut(s)	207, 279, 487, 785
Hpy188I	TCNGA	6 cut(s)	99, 120, 370, 457, 702, 825
Hpy188III	TCNNGA	5 cut(s)	16, 169, 414, 542, 580
Hpy8I	GTNNAC	4 cut(s)	207, 279, 487, 785
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	311, 393, 668, 693, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 320, 329, 416, 728, 737
HpyF3I	CTNAG	5 cut(s)	174, 456, 736, 792, 853
Kzo9I	GATC	2 cut(s)	94, 697
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	5 cut(s)	295, 323, 326, 715, 743
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	876, 883
MaeIII	GTNAC	3 cut(s)	34, 70, 840
MalI	GATC	2 cut(s)	96, 699
MboI	GATC	2 cut(s)	94, 697
MboII	GAAGA	6 cut(s)	139, 250, 449, 535, 635, 695
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	3 cut(s)	107, 583, 800
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	467, 873
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	5 cut(s)	216, 291, 477, 677, 798
Msp20I	TGGCCA	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	4 cut(s)	225, 609, 610, 780
MvaI	CCWGG	2 cut(s)	225, 780
MwoI	GCNNNNNNNGC	6 cut(s)	314, 320, 329, 416, 728, 737
NciI	CCSGG	2 cut(s)	609, 610
NdeII	GATC	2 cut(s)	94, 697
NlaIV	GGNNCC	2 cut(s)	53, 712
PaqCI	CACCTGC	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	310, 313, 316, 730, 733
PleI	GAGTC	2 cut(s)	466, 873
PpsI	GAGTC	2 cut(s)	466, 873
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	223, 778
PspGI	CCWGG	2 cut(s)	223, 778
PspN4I	GGNNCC	2 cut(s)	53, 712
PspPI	GGNCC	2 cut(s)	52, 509
PstI	CTGCAG	2 cut(s)	313, 733
PsuI	RGATCY	1 cut(s)	697
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	216, 291, 477, 677, 798
SatI	GCNGC	5 cut(s)	309, 312, 315, 729, 732
Sau3AI	GATC	2 cut(s)	94, 697
Sau96I	GGNCC	2 cut(s)	52, 509
SchI	GAGTC	2 cut(s)	467, 873
ScrFI	CCNGG	4 cut(s)	225, 609, 610, 780
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	3 cut(s)	279, 309, 729
SinI	GGWCC	1 cut(s)	509
SmaI	CCCGGG	1 cut(s)	610
SmlI	CTYRAG	5 cut(s)	333, 476, 518, 530, 540
SmoI	CTYRAG	5 cut(s)	333, 476, 518, 530, 540
Sse9I	AATT	3 cut(s)	107, 583, 800
SseBI	AGGCCT	1 cut(s)	629
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	2 cut(s)	637, 675
SspMI	CTAG	2 cut(s)	876, 883
SstI	GAGCTC	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	629
StyD4I	CCNGG	4 cut(s)	223, 607, 608, 778
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	107, 583, 800
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	5 cut(s)	216, 291, 477, 677, 798
Tru9I	TTAA	5 cut(s)	216, 291, 477, 677, 798
TseI	GCWGC	5 cut(s)	308, 311, 314, 728, 731
TspDTI	ATGAA	3 cut(s)	17, 450, 696
TspMI	CCCGGG	1 cut(s)	608
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	2 cut(s)	107, 583
XmaI	CCCGGG	1 cut(s)	608
XmiI	GTMKAC	2 cut(s)	206, 278
XspI	CTAG	2 cut(s)	876, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.