Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Forward (+)

91561152 .. 91565417

Gene Structure 4266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGCAGTCACTTCATCTTCTTCACCTTCATTTTCTTCTTCGTTTTTAACGAAACTAAGCCACGCGCCGAGTCTGCGACTTTGTTTTGCAGTCTCGCCCTTGAGAGTGAAGAAGCACATGGCTCACACTATAGCTCGCGCCACTCTCGGCCTCACTCAGATTTCTCCGGCCTTTGAAGCCCCTAAGCTCACTTTGGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTCGAAAATCCGATTTTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTGAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGAGAAATCTTGCACAGCTTCTGCAATAGCATCTGGAGCTGTTTTGGGGATATATGAAGACAACAGGTATAAATCTGAGTCAAAAAAACCAGCTCTCAAGTCTGTGGACATTCTTGGTCTTGGAACTGGACCTGAACTAGAGAAGAAGCTCAAATATGCTCAAGATGTTGCTGCTGGAATAATACTTGGGAAAGAGCTCGTGAATTCACCTGCCAATGTTCTCACACCTGGGAAACTAGCAGAAGAGGCCTCAAATATTGCTTCCTTATACAGTGATGTTCTTTCTGCAAAGATATTGAATGAAGAGCAATGCAAAGATCTGAAAATGGGTTCCTATTTGGCTGTGGCTGCAGCCTCAGCAAATCCTCCACATTTTATTCACTTGACCTACAAACCCCTGGTGGACCTGCTAAGCTTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

339

Amino Acids

35.31

Weight (kDa)

7.63

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	93 - 225	4.8e-27	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	262 - 331	3.5e-13	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	814
Acc36I	ACCTGC	3 cut(s)	279, 814, 1011
AccI	GTMKAC	2 cut(s)	422, 494
AccII	CGCG	2 cut(s)	101, 174
AciI	CCGC	2 cut(s)	278, 536
AcoI	YGGCCR	2 cut(s)	6, 415
AcsI	RAATTY	2 cut(s)	323, 799
AfiI	CCNNNNNNNGG	4 cut(s)	277, 424, 446, 588
AgsI	TTSAA	3 cut(s)	212, 343, 895
AjnI	CCWGG	3 cut(s)	439, 823, 993
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	2 cut(s)	133, 388
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	5 cut(s)	6, 184, 204, 415, 843
ApeKI	GCWGC	7 cut(s)	524, 527, 530, 533, 767, 944, 947
ApoI	RAATTY	2 cut(s)	323, 799
AspLEI	GCGC	2 cut(s)	103, 176
AspS9I	GGNCC	3 cut(s)	268, 725, 1000
AsuHPI	GGTGA	2 cut(s)	51, 795
AsuII	TTCGAA	1 cut(s)	327
AvaII	GGWCC	3 cut(s)	268, 725, 1000
BalI	TGGCCA	2 cut(s)	8, 417
BanII	GRGCYC	1 cut(s)	795
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	795
BbvCI	CCTCAGC	2 cut(s)	378, 952
BbvI	GCAGC	7 cut(s)	511, 539, 542, 545, 754, 931, 959
BciT130I	CCWGG	3 cut(s)	441, 825, 995
BcoDI	GTCTC	2 cut(s)	133, 388
BfaI	CTAG	2 cut(s)	734, 833
BfmI	CTRYAG	4 cut(s)	165, 495, 525, 945
BfuAI	ACCTGC	3 cut(s)	279, 814, 1011
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	8 cut(s)	525, 528, 531, 534, 537, 768, 945, 948
BlpI	GCTNAGC	1 cut(s)	1007
BlsI	GCNGC	8 cut(s)	526, 529, 532, 535, 538, 769, 946, 949
Bme1390I	CCNGG	3 cut(s)	441, 825, 995
Bme18I	GGWCC	3 cut(s)	268, 725, 1000
BmgT120I	GGNCC	3 cut(s)	268, 725, 1000
BmiI	GGNNCC	2 cut(s)	269, 928
BmrFI	CCNGG	3 cut(s)	441, 825, 995
BmsI	GCATC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	3 cut(s)	219, 378, 952
Bpu1102I	GCTNAGC	1 cut(s)	1007
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	4 cut(s)	157, 534, 677, 741
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	582, 824, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 424, 446, 588
Bse1I	ACTGG	3 cut(s)	9, 418, 727
Bse3DI	GCAATG	1 cut(s)	911
BseBI	CCWGG	3 cut(s)	441, 825, 995
BseDI	CCNNGG	3 cut(s)	582, 824, 993
BseLI	CCNNNNNNNGG	4 cut(s)	277, 424, 446, 588
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	6 cut(s)	206, 369, 381, 588, 663, 966
BseNI	ACTGG	3 cut(s)	9, 418, 727
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	7 cut(s)	511, 539, 542, 545, 754, 931, 959
Bsh1236I	CGCG	2 cut(s)	101, 174
BshFI	GGCC	5 cut(s)	8, 186, 206, 417, 845
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	277, 424, 446, 588
BsmAI	GTCTC	2 cut(s)	133, 388
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	8, 186, 206, 417, 845
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	310, 913
Bsp1720I	GCTNAGC	1 cut(s)	1007
BspACI	CCGC	2 cut(s)	278, 536
BspANI	GGCC	5 cut(s)	8, 186, 206, 417, 845
BspCNI	CTCAG	6 cut(s)	205, 370, 382, 589, 664, 965
BspFNI	CGCG	2 cut(s)	101, 174
BspLI	GGNNCC	2 cut(s)	269, 928
BspMAI	CTGCAG	2 cut(s)	529, 949
BspMI	ACCTGC	3 cut(s)	279, 814, 1011
BspQI	GCTCTTC	1 cut(s)	894
BspT104I	TTCGAA	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	3 cut(s)	9, 418, 727
BssECI	CCNNGG	3 cut(s)	582, 824, 993
BssMI	GATC	2 cut(s)	310, 913
BssSI	CACGAG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	3 cut(s)	441, 825, 995
Bst4CI	ACNGT	2 cut(s)	427, 869
Bst6I	CTCTTC	3 cut(s)	449, 834, 894
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	172, 276, 576
BstDEI	CTNAG	9 cut(s)	92, 192, 219, 378, 390, 597, 672, 952, 1007
BstFNI	CGCG	2 cut(s)	101, 174
BstHHI	GCGC	2 cut(s)	103, 176
BstKTI	GATC	2 cut(s)	313, 916
BstMAI	GTCTC	2 cut(s)	133, 388
BstMBI	GATC	2 cut(s)	310, 913
BstNI	CCWGG	3 cut(s)	441, 825, 995
BstSCI	CCNGG	3 cut(s)	439, 823, 993
BstSFI	CTRYAG	4 cut(s)	165, 495, 525, 945
BstUI	CGCG	2 cut(s)	101, 174
BstV1I	GCAGC	7 cut(s)	511, 539, 542, 545, 754, 931, 959
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	5 cut(s)	8, 186, 206, 417, 845
BtsIMutI	CAGTG	2 cut(s)	16, 874
BveI	ACCTGC	3 cut(s)	279, 814, 1011
Cac8I	GCNNGC	3 cut(s)	172, 276, 576
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	2 cut(s)	103, 176
Cfr13I	GGNCC	3 cut(s)	268, 725, 1000
CviAII	CATG	1 cut(s)	154
DdeI	CTNAG	9 cut(s)	92, 192, 219, 378, 390, 597, 672, 952, 1007
DpnI	GATC	2 cut(s)	312, 915
DpnII	GATC	2 cut(s)	310, 913
EaeI	YGGCCR	2 cut(s)	6, 415
Eam1104I	CTCTTC	3 cut(s)	449, 834, 894
EarI	CTCTTC	3 cut(s)	449, 834, 894
Ecl136II	GAGCTC	1 cut(s)	793
Eco147I	AGGCCT	1 cut(s)	845
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	268, 725, 1000
Eco53kI	GAGCTC	1 cut(s)	793
EcoICRI	GAGCTC	1 cut(s)	793
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	3 cut(s)	439, 823, 993
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	1 cut(s)	157
FaiI	YATR	7 cut(s)	155, 167, 649, 651, 666, 753, 865
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	153
FblI	GTMKAC	2 cut(s)	422, 494
Fnu4HI	GCNGC	8 cut(s)	525, 528, 531, 534, 537, 768, 945, 948
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	8 cut(s)	525, 528, 531, 534, 537, 768, 945, 948
FspBI	CTAG	2 cut(s)	734, 833
GlaI	GCGC	2 cut(s)	102, 175
GluI	GCNGC	8 cut(s)	525, 528, 531, 534, 537, 768, 945, 948
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	8, 186, 206, 417, 845
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	2 cut(s)	103, 176
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	2 cut(s)	101, 174
HinP1I	GCGC	2 cut(s)	101, 174
HindIII	AAGCTT	2 cut(s)	501, 1009
HinfI	GANTC	3 cut(s)	106, 353, 674
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	51, 795
Hpy166II	GTNNAC	4 cut(s)	423, 495, 703, 1000
Hpy188I	TCNGA	7 cut(s)	195, 315, 336, 586, 598, 673, 918
Hpy188III	TCNNGA	4 cut(s)	385, 630, 758, 796
Hpy8I	GTNNAC	4 cut(s)	423, 495, 703, 1000
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	72, 289
HpyCH4III	ACNGT	2 cut(s)	427, 869
HpyCH4V	TGCA	7 cut(s)	125, 527, 609, 620, 884, 909, 947
HpyF3I	CTNAG	9 cut(s)	92, 192, 219, 378, 390, 597, 672, 952, 1007
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	2 cut(s)	101, 174
Kzo9I	GATC	2 cut(s)	310, 913
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	7 cut(s)	511, 539, 542, 545, 754, 931, 959
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	2 cut(s)	734, 833
MaeIII	GTNAC	3 cut(s)	43, 250, 286
MalI	GATC	2 cut(s)	312, 915
MboI	GATC	2 cut(s)	310, 913
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	2 cut(s)	8, 417
MluCI	AATT	3 cut(s)	323, 799, 1015
MluNI	TGGCCA	2 cut(s)	8, 417
MlyI	GAGTC	2 cut(s)	115, 683
Mox20I	TGGCCA	2 cut(s)	8, 417
MscI	TGGCCA	2 cut(s)	8, 417
MseI	TTAA	3 cut(s)	83, 507, 1013
Msp20I	TGGCCA	2 cut(s)	8, 417
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	441, 825, 995
MvaI	CCWGG	3 cut(s)	441, 825, 995
MvnI	CGCG	2 cut(s)	101, 174
NdeII	GATC	2 cut(s)	310, 913
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	269, 928
NmeAIII	GCCGAG	2 cut(s)	129, 162
NmuCI	GTSAC	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	845
PciSI	GCTCTTC	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	8 cut(s)	526, 529, 532, 535, 538, 769, 946, 949
PleI	GAGTC	2 cut(s)	114, 682
PpsI	GAGTC	2 cut(s)	114, 682
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	3 cut(s)	439, 823, 993
PspGI	CCWGG	3 cut(s)	439, 823, 993
PspN4I	GGNNCC	2 cut(s)	269, 928
PspPI	GGNCC	3 cut(s)	268, 725, 1000
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	2 cut(s)	529, 949
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	913
SacI	GAGCTC	1 cut(s)	795
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	3 cut(s)	83, 507, 1013
SatI	GCNGC	8 cut(s)	525, 528, 531, 534, 537, 768, 945, 948
Sau3AI	GATC	2 cut(s)	310, 913
Sau96I	GGNCC	3 cut(s)	268, 725, 1000
SchI	GAGTC	2 cut(s)	115, 683
ScrFI	CCNGG	3 cut(s)	441, 825, 995
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	4 cut(s)	165, 495, 525, 945
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	3 cut(s)	268, 725, 1000
SmlI	CTYRAG	4 cut(s)	136, 549, 692, 756
SmoI	CTYRAG	4 cut(s)	136, 549, 692, 756
Sse9I	AATT	3 cut(s)	323, 799, 1015
SseBI	AGGCCT	1 cut(s)	845
SsiI	CCGC	2 cut(s)	278, 536
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	734, 833
SstI	GAGCTC	1 cut(s)	795
StuI	AGGCCT	1 cut(s)	845
StyD4I	CCNGG	3 cut(s)	439, 823, 993
TaaI	ACNGT	2 cut(s)	427, 869
TaqI	TCGA	4 cut(s)	320, 327, 386, 452
TasI	AATT	3 cut(s)	323, 799, 1015
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	83, 507, 1013
Tru9I	TTAA	3 cut(s)	83, 507, 1013
TscAI	CASTG	2 cut(s)	16, 874
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	7 cut(s)	524, 527, 530, 533, 767, 944, 947
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	39, 54, 666, 912
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	16, 874
VpaK11BI	GGWCC	3 cut(s)	268, 725, 1000
XapI	RAATTY	2 cut(s)	323, 799
XmiI	GTMKAC	2 cut(s)	422, 494
XspI	CTAG	2 cut(s)	734, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.