Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

27110122 .. 27126318

Gene Structure 16197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCACACAATTGCTCACACCACTCTCAGCCTCACTCAGATTTCCCCAGTCTTTGAAGCCCCAAAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGCAGGTGTTGGTGTTACGCAGAAGGATTTGGCGAAAGATCAGAACTCGAAATTCAAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGAGCAGTTTTGGGTATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAACCAGCTCTTAAGTCTGTGGACAGTCTTGGTCTTGGAATTGGACCTGAACTTGAGAAGAAGCTCAAGAATGCTCAAGATGTTGCTTCTGGAATAATACTTGGGAAAGAGCTCACAAATTCACCTGCCAATGTTCTCACACCTGGGAAACTAGCAGAAGAGGCCTCAAACATTGCTTCCTTATATAGTGATGTTCTACAGAAAGGGAGGTACAATGAGAAGCGCGGCGGAAATGTGGCTGCTAGGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTGCCCCAACTCTGCGCATTCCTGTGCCTGTAGGTACTGTTGTGAAGCGGAAACGAGAGACGCTGTTGCGTGATCTACCCCAGCCAGGTGATGAAATCCTTGTAGCGAGGGGTGCACATGGAGGGATTAGCTTGGTAGAAATGCTAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGTAAAGTGGTCATGCTTATTCTCACTTGGTATTCCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

261

Amino Acids

28.2

Weight (kDa)

9.5

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP1_OBG	PF01018	171 - 229	1.7e-07	GTP1/OBG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	107, 388
Acc16I	TGCGCA	1 cut(s)	551
Acc36I	ACCTGC	2 cut(s)	107, 388
AccII	CGCG	2 cut(s)	80, 480
AciI	CCGC	3 cut(s)	480, 483, 583
AcsI	RAATTY	2 cut(s)	164, 373
AfaI	GTAC	2 cut(s)	467, 571
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	59, 169, 184
AjnI	CCWGG	2 cut(s)	397, 619
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	6 cut(s)	70, 190, 263, 319, 367, 666
AluI	AGCT	6 cut(s)	70, 190, 263, 319, 367, 666
Alw21I	GWGCWC	2 cut(s)	369, 652
Alw26I	GTCTC	1 cut(s)	587
Alw44I	GTGCAC	1 cut(s)	648
AoxI	GGCC	1 cut(s)	417
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	2 cut(s)	494, 536
ApoI	RAATTY	2 cut(s)	164, 373
AspLEI	GCGC	2 cut(s)	480, 552
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	369, 635
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	652
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	369, 652
BbvI	GCAGC	2 cut(s)	481, 523
BccI	CCATC	2 cut(s)	521, 697
BciT130I	CCWGG	2 cut(s)	399, 621
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	3 cut(s)	407, 498, 680
BfmI	CTRYAG	2 cut(s)	452, 564
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	107, 388
BisI	GCNGC	3 cut(s)	481, 495, 537
BlsI	GCNGC	3 cut(s)	482, 496, 538
Bme1390I	CCNGG	2 cut(s)	399, 621
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	2 cut(s)	399, 621
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	234
BpuEI	CTTGAG	3 cut(s)	305, 315, 329
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	399, 621
BseDI	CCNNGG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	43, 53, 237
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	2 cut(s)	481, 523
BseYI	CCCAGC	1 cut(s)	615
Bsh1236I	CGCG	2 cut(s)	80, 480
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	369, 652
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	587
BsmBI	CGTCTC	1 cut(s)	587
BsmI	GAATGC	2 cut(s)	331, 552
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	369, 652
Bsp143I	GATC	2 cut(s)	151, 607
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	3 cut(s)	480, 483, 583
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	42, 52, 238
BspFNI	CGCG	2 cut(s)	80, 480
BspMI	ACCTGC	2 cut(s)	107, 388
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	2 cut(s)	151, 607
Bst2UI	CCWGG	2 cut(s)	399, 621
Bst4CI	ACNGT	2 cut(s)	281, 574
Bst6I	CTCTTC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	29, 39, 246
BstFNI	CGCG	2 cut(s)	80, 480
BstHHI	GCGC	2 cut(s)	480, 552
BstKTI	GATC	2 cut(s)	154, 610
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	2 cut(s)	151, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 647
BstNI	CCWGG	2 cut(s)	399, 621
BstSCI	CCNGG	2 cut(s)	397, 619
BstSFI	CTRYAG	2 cut(s)	452, 564
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	80, 480
BstV1I	GCAGC	2 cut(s)	481, 523
BstV2I	GAAGAC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	419
BtuMI	TCGCGA	1 cut(s)	80
BveI	ACCTGC	2 cut(s)	107, 388
CfoI	GCGC	2 cut(s)	480, 552
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	466, 570
CviAII	CATG	2 cut(s)	653, 756
CviQI	GTAC	2 cut(s)	466, 570
DdeI	CTNAG	3 cut(s)	29, 39, 246
DpnI	GATC	2 cut(s)	153, 609
DpnII	GATC	2 cut(s)	151, 607
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	397, 619
EcoT38I	GRGCYC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	2 cut(s)	656, 759
FaiI	YATR	8 cut(s)	221, 223, 225, 240, 439, 441, 654, 757
FatI	CATG	2 cut(s)	652, 755
Fnu4HI	GCNGC	3 cut(s)	481, 495, 537
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	3 cut(s)	481, 495, 537
FspBI	CTAG	3 cut(s)	407, 498, 680
FspI	TGCGCA	1 cut(s)	551
GlaI	GCGC	2 cut(s)	479, 551
GluI	GCNGC	3 cut(s)	481, 495, 537
GsaI	CCCAGC	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	419
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	2 cut(s)	480, 552
Hin1II	CATG	2 cut(s)	656, 759
Hin6I	GCGC	2 cut(s)	478, 550
HinP1I	GCGC	2 cut(s)	478, 550
HinfI	GANTC	2 cut(s)	194, 248
HphI	GGTGA	2 cut(s)	369, 635
Hpy166II	GTNNAC	2 cut(s)	277, 650
Hpy188I	TCNGA	5 cut(s)	42, 156, 177, 247, 780
Hpy188III	TCNNGA	4 cut(s)	79, 322, 332, 345
Hpy8I	GTNNAC	2 cut(s)	277, 650
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	281, 574
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 647
HpyF3I	CTNAG	3 cut(s)	29, 39, 246
Hsp92II	CATG	2 cut(s)	656, 759
HspAI	GCGC	2 cut(s)	478, 550
Kzo9I	GATC	2 cut(s)	151, 607
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	481, 523
MaeI	CTAG	3 cut(s)	407, 498, 680
MaeIII	GTNAC	2 cut(s)	97, 127
MalI	GATC	2 cut(s)	153, 609
MboI	GATC	2 cut(s)	151, 607
MboII	GAAGA	4 cut(s)	196, 239, 325, 425
MfeI	CAATTG	2 cut(s)	12, 518
MhlI	GDGCHC	2 cut(s)	369, 652
MluCI	AATT	5 cut(s)	12, 164, 294, 373, 518
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	7 cut(s)	44, 409, 430, 456, 523, 636, 650
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	2 cut(s)	557, 719
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	399, 621
MunI	CAATTG	2 cut(s)	12, 518
Mva1269I	GAATGC	2 cut(s)	331, 552
MvaI	CCWGG	2 cut(s)	399, 621
MvnI	CGCG	2 cut(s)	80, 480
MwoI	GCNNNNNNNGC	2 cut(s)	416, 647
NdeII	GATC	2 cut(s)	151, 607
NlaIII	CATG	2 cut(s)	656, 759
NruI	TCGCGA	1 cut(s)	80
NsbI	TGCGCA	1 cut(s)	551
OliI	CACNNNNGTG	1 cut(s)	719
PaqCI	CACCTGC	2 cut(s)	107, 388
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	2 cut(s)	331, 552
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	482, 496, 538
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	397, 619
PspFI	CCCAGC	1 cut(s)	615
PspGI	CCWGG	2 cut(s)	397, 619
PspPI	GGNCC	1 cut(s)	299
RruI	TCGCGA	1 cut(s)	80
RsaI	GTAC	2 cut(s)	467, 571
RsaNI	GTAC	2 cut(s)	466, 570
RseI	CAYNNNNRTG	2 cut(s)	557, 719
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	481, 495, 537
Sau3AI	GATC	2 cut(s)	151, 607
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	399, 621
SduI	GDGCHC	2 cut(s)	369, 652
SfcI	CTRYAG	2 cut(s)	452, 564
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	557, 719
SmlI	CTYRAG	4 cut(s)	266, 308, 320, 330
SmoI	CTYRAG	4 cut(s)	266, 308, 320, 330
Sse9I	AATT	5 cut(s)	12, 164, 294, 373, 518
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	3 cut(s)	480, 483, 583
SspMI	CTAG	3 cut(s)	407, 498, 680
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	397, 619
TaaI	ACNGT	2 cut(s)	281, 574
TaqI	TCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	12, 164, 294, 373, 518
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	2 cut(s)	494, 536
TspDTI	ATGAA	2 cut(s)	240, 642
TspGWI	ACGGA	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	164, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	3 cut(s)	407, 498, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.