Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

42707248 .. 42707905

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1181600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACCGCAGCCGTTGGAGCAATGGCCATGGAGGGAATGGGAAACGGACTCTACAGCTCTTTGGTGAGATAATTAGGCAAGGAGTGAAACCAGATGTAGTATTCTTTGTGGCACTACTAACAGCATGCAGCGATGTAGGGTTTTTGGAACAATTTCAGGTTAATGTAGCCTGTCCACGGCTTCCGCCCCACATTGTTCATTACGGTTGCATGGTAAAGAGCATGCCAATGGAGCCCAACGACGTCATTTGGGGGACTCTCTTGGCTGCTTGCCGAACCCACAAAATGTCGAAATTGCATCACATGCAGCCGAACGGATATCCAAGCTGTCTACTCAGAGGACCGGAATTCATGTGCTTCTTTGAAGGAGAAAGGCGTCCACAAGGTGGCGGATCAAGCTCCATAGAATTACACGTCAACGGAATGATCCACGAGTTTACATCAGGTCATGATACTAGCACAGAGAAGAGCCAGACTGGATTGATGCTACAAGAAATCAACTGCAGACTAAGAGAAGCCGGTCATGTTCCTGATTTGGATATTGTCCTGCTTGATGTCGATGAGAAGGAAAAGGGATACTTGCTCAGTCGACACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

6.59

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccI	GTMKAC	2 cut(s)	331, 589
AciI	CCGC	3 cut(s)	7, 185, 390
AclWI	GGATC	2 cut(s)	400, 421
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	2 cut(s)	243, 376
AdeI	CACNNNGTG	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	177, 386
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	365
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	3 cut(s)	58, 327, 399
AluI	AGCT	3 cut(s)	58, 327, 399
AlwI	GGATC	2 cut(s)	400, 421
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	9, 129, 266, 307
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	4, 341
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	4, 341
BalI	TGGCCA	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	431
BbvI	GCAGC	4 cut(s)	21, 141, 253, 319
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	2 cut(s)	53, 502
BfuI	GTATCC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	10, 130, 267, 308
BlsI	GCNGC	4 cut(s)	11, 131, 268, 309
Bme18I	GGWCC	2 cut(s)	4, 341
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	4, 341
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	2 cut(s)	307, 474
BsaHI	GRCGYC	2 cut(s)	243, 376
BsaJI	CCNNGG	2 cut(s)	28, 176
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 386
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	28, 176
BseLI	CCNNNNNNNGG	2 cut(s)	177, 386
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	349, 598
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	21, 141, 253, 319
BshFI	GGCC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	344, 519
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	177, 386
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	392, 426
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	7, 185, 390
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	348, 597
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	506
BspPI	GGATC	2 cut(s)	400, 421
BspQI	GCTCTTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	28, 176
BssMI	GATC	2 cut(s)	392, 426
BssNI	GRCGYC	2 cut(s)	243, 376
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	206, 596
Bst6I	CTCTTC	1 cut(s)	461
BstACI	GRCGYC	2 cut(s)	243, 376
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	127, 224, 271
BstDEI	CTNAG	3 cut(s)	335, 509, 584
BstDSI	CCRYGG	2 cut(s)	28, 176
BstKTI	GATC	2 cut(s)	395, 429
BstMBI	GATC	2 cut(s)	392, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 232, 304, 396
BstNSI	RCATGY	3 cut(s)	129, 226, 307
BstSFI	CTRYAG	2 cut(s)	53, 502
BstV1I	GCAGC	4 cut(s)	21, 141, 253, 319
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	2 cut(s)	28, 176
BtgZI	GCGATG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	127, 224, 271
CciI	TCATGA	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	4, 341
CseI	GACGC	1 cut(s)	365
CviAII	CATG	8 cut(s)	29, 126, 211, 223, 304, 352, 449, 524
DdeI	CTNAG	3 cut(s)	335, 509, 584
DpnI	GATC	2 cut(s)	394, 428
DpnII	GATC	2 cut(s)	392, 426
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	2 cut(s)	174, 405
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	4, 341
EcoRI	GAATTC	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	8 cut(s)	32, 129, 214, 226, 307, 355, 452, 527
FaiI	YATR	9 cut(s)	30, 127, 212, 224, 305, 353, 404, 450, 525
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	8 cut(s)	28, 125, 210, 222, 303, 351, 448, 523
FblI	GTMKAC	2 cut(s)	331, 589
Fnu4HI	GCNGC	4 cut(s)	10, 130, 267, 308
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	10, 130, 267, 308
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	4 cut(s)	10, 130, 267, 308
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	344, 519
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	2 cut(s)	243, 376
Hin1II	CATG	8 cut(s)	32, 129, 214, 226, 307, 355, 452, 527
HincII	GTYRAC	2 cut(s)	418, 590
HindII	GTYRAC	2 cut(s)	418, 590
HinfI	GANTC	2 cut(s)	49, 256
HpaII	CCGG	2 cut(s)	344, 519
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	6 cut(s)	176, 332, 380, 418, 438, 590
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	2 cut(s)	449, 530
Hpy8I	GTNNAC	6 cut(s)	176, 332, 380, 418, 438, 590
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	359, 559
HpyCH4III	ACNGT	2 cut(s)	206, 596
HpyCH4IV	ACGT	2 cut(s)	243, 414
HpyCH4V	TGCA	5 cut(s)	129, 210, 298, 307, 504
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 232, 304, 396
HpyF3I	CTNAG	3 cut(s)	335, 509, 584
HpySE526I	ACGT	2 cut(s)	243, 414
Hsp92I	GRCGYC	2 cut(s)	243, 376
Hsp92II	CATG	8 cut(s)	32, 129, 214, 226, 307, 355, 452, 527
Kzo9I	GATC	2 cut(s)	392, 426
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	3 cut(s)	18, 232, 404
Lsp1109I	GCAGC	4 cut(s)	21, 141, 253, 319
LweI	GCATC	2 cut(s)	307, 474
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	2 cut(s)	243, 414
MalI	GATC	2 cut(s)	394, 428
MboI	GATC	2 cut(s)	392, 426
MboII	GAAGA	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	5 cut(s)	72, 152, 293, 347, 407
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	43, 250
MnlI	CCTC	2 cut(s)	26, 332
Mox20I	TGGCCA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	2 cut(s)	344, 519
MwoI	GCNNNNNNNGC	4 cut(s)	18, 232, 304, 396
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	392, 426
NlaIII	CATG	8 cut(s)	32, 129, 214, 226, 307, 355, 452, 527
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	3 cut(s)	129, 226, 307
PaeI	GCATGC	2 cut(s)	129, 226
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	11, 131, 268, 309
PleI	GAGTC	2 cut(s)	43, 250
PpsI	GAGTC	2 cut(s)	43, 250
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	4, 341
PstI	CTGCAG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	10, 130, 267, 308
Sau3AI	GATC	2 cut(s)	392, 426
Sau96I	GGNCC	2 cut(s)	4, 341
SchI	GAGTC	2 cut(s)	43, 250
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	60, 162, 246, 329, 388, 401, 417, 448
SfaNI	GCATC	2 cut(s)	307, 474
SfcI	CTRYAG	2 cut(s)	53, 502
SinI	GGWCC	2 cut(s)	4, 341
SmiMI	CAYNNNNRTG	1 cut(s)	227
SphI	GCATGC	2 cut(s)	129, 226
Sse9I	AATT	5 cut(s)	72, 152, 293, 347, 407
SsiI	CCGC	3 cut(s)	7, 185, 390
SspMI	CTAG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	206, 596
TaiI	ACGT	2 cut(s)	246, 417
TaqI	TCGA	3 cut(s)	290, 558, 589
TasI	AATT	5 cut(s)	72, 152, 293, 347, 407
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	4 cut(s)	9, 129, 266, 307
TspDTI	ATGAA	2 cut(s)	188, 340
TspGWI	ACGGA	3 cut(s)	61, 330, 435
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	4, 341
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	3 cut(s)	129, 226, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmiI	GTMKAC	2 cut(s)	331, 589
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.