Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014755.1

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

21367 .. 22007

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014755.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggtaggaggaatatgccaaaggatccagtctagtttgattcatgagtttacctccggtggtgatactgatacacacacacacacagagagaactgagaagagccatattgcattgatgttgcaagaaataaacagcagactcagagatgttggtcacgttcctgatttggacagtgtcctccttgatgttgatgagaagaagaaagagtacttgctcagtcgacatagtgagaaagttgccatagcttctgggtttattggtaaaggggaaggtgtgccaatttgcatgtccaggtatgactccattatcattgagccatacctcaggggcaataggcacaacccaatctcctccatttccattgtccaaactcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

126

Amino Acids

14.06

Weight (kDa)

6.22

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	19, 32
AfaI	GTAC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwI	GGATC	2 cut(s)	19, 32
AsuHPI	GGTGA	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BciT130I	CCWGG	1 cut(s)	295
BfaI	CTAG	1 cut(s)	33
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bse1I	ACTGG	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	295
BseMII	CTCAG	4 cut(s)	87, 157, 232, 340
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	24
BspCNI	CTCAG	4 cut(s)	88, 156, 231, 339
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	19, 32
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	96, 143, 218, 326
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	44, 289
CviJI	RGCY	3 cut(s)	105, 248, 319
CviKI_1	RGCY	3 cut(s)	105, 248, 319
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	96, 143, 218, 326
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	2 cut(s)	47, 292
FaiI	YATR	8 cut(s)	16, 45, 108, 228, 245, 290, 300, 322
FatI	CATG	2 cut(s)	43, 288
FblI	GTMKAC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	47, 292
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	40, 141, 302
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	51, 224
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	44, 164
Hpy8I	GTNNAC	2 cut(s)	51, 224
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	113, 124, 288
HpyF3I	CTNAG	4 cut(s)	96, 143, 218, 326
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	47, 292
Kzo9I	GATC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	7 cut(s)	41, 70, 177, 237, 280, 307, 313
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	112, 211, 214
MflI	RGATCY	1 cut(s)	24
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	135, 296
MnlI	CCTC	4 cut(s)	64, 191, 335, 364
MseI	TTAA	1 cut(s)	379
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	47, 292
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	176
PleI	GAGTC	2 cut(s)	135, 296
PpsI	GAGTC	2 cut(s)	135, 296
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	24
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	2 cut(s)	135, 296
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	6 cut(s)	56, 162, 250, 277, 299, 327
Sse9I	AATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	181
Tth111I	GACNNNGTC	1 cut(s)	176
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.