Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

18296045 .. 18296984

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCCTGGAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTCGATGACATTCTTAACCAAGGAGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCAATGTTGGTCTTTTGGAACATGGACGGAACATTTCATGTCAATGCACCGGGCTCTTGGAAGAAGCTGTTGATCTGATAAAGTGCATGCCAATGGAACCTAATGATGATGTCATTTGGGGATGTCTCTTGGCTGCGTGTCAAACCCACAAAAAGGTCGAAATGGCAGCATATGCAGCTGAACAGATATCAAAATTGACAGAGAAGAGCCACATTGCATTGATGTTGCAAGAAATAACCAGCAGACTCAGAGATGCTAGACACGTTCCTTATTTGGACAATGTCCTGCTTAATGTTGATGAGAAAGATAAAGAGTACTTGCCATTCACCAACCGTACCCTGTCCCACTTAAGAGTTCCGACAAGAATGCCATGCGTTCAGATGTATTCTTTCAGAGACAAAGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

172

Amino Acids

19.42

Weight (kDa)

5.11

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	96, 425, 445
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	29, 37, 176, 287
AluI	AGCT	4 cut(s)	29, 37, 176, 287
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	239, 498
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	108, 242, 275, 284
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	31, 165
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	120, 229, 287, 296
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	239, 498
BfaI	CTAG	2 cut(s)	32, 366
BfrI	CTTAAG	1 cut(s)	457
BisI	GCNGC	4 cut(s)	109, 243, 276, 285
BlsI	GCNGC	4 cut(s)	110, 244, 277, 286
BmcAI	AGTACT	2 cut(s)	96, 425
Bme1390I	CCNGG	2 cut(s)	8, 160
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	8, 160
BmsI	GCATC	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	6, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse3DI	GCAATG	2 cut(s)	118, 321
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	6, 58
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	118, 321
BseMII	CTCAG	1 cut(s)	370
BseXI	GCAGC	4 cut(s)	120, 229, 287, 296
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	239, 498
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	31, 165
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	457
BsrDI	GCAATG	2 cut(s)	118, 321
BssECI	CCNNGG	2 cut(s)	6, 58
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	27, 106, 197
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	239, 498
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 284
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	2 cut(s)	108, 199
BstSCI	CCNGG	2 cut(s)	6, 158
BstV1I	GCAGC	4 cut(s)	120, 229, 287, 296
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	27, 106, 197
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	95, 424, 444
CviAII	CATG	5 cut(s)	105, 131, 147, 196, 480
CviJI	RGCY	8 cut(s)	5, 29, 37, 163, 176, 242, 287, 318
CviKI_1	RGCY	8 cut(s)	5, 29, 37, 163, 176, 242, 287, 318
CviQI	GTAC	3 cut(s)	95, 424, 444
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	31, 165
Eco32I	GATATC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	31, 165
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	5 cut(s)	108, 134, 150, 199, 483
FaiI	YATR	7 cut(s)	106, 132, 148, 197, 280, 282, 481
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	104, 130, 146, 195, 479
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	109, 243, 276, 285
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	31, 165
Fsp4HI	GCNGC	4 cut(s)	109, 243, 276, 285
FspBI	CTAG	2 cut(s)	32, 366
GluI	GCNGC	4 cut(s)	109, 243, 276, 285
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	5 cut(s)	108, 134, 150, 199, 483
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	5 cut(s)	186, 359, 468, 489, 503
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	6 cut(s)	108, 156, 195, 284, 326, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 284
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	108, 134, 150, 199, 483
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	20, 84, 172, 361, 407, 461
Lsp1109I	GCAGC	4 cut(s)	120, 229, 287, 296
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	32, 366
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	182, 325
MhlI	GDGCHC	2 cut(s)	31, 165
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	491
MseI	TTAA	3 cut(s)	54, 399, 458
MslI	CAYNNNNRTG	2 cut(s)	151, 200
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	8, 160
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	281, 284
NciI	CCSGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	5 cut(s)	108, 134, 150, 199, 483
NlaIV	GGNNCC	1 cut(s)	207
NspI	RCATGY	2 cut(s)	108, 199
PaeI	GCATGC	2 cut(s)	108, 199
PciSI	GCTCTTC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	480
PflFI	GACNNNGTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	110, 244, 277, 286
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	3 cut(s)	96, 425, 445
RsaNI	GTAC	3 cut(s)	95, 424, 444
RseI	CAYNNNNRTG	2 cut(s)	151, 200
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	54, 399, 458
SatI	GCNGC	4 cut(s)	109, 243, 276, 285
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	2 cut(s)	96, 425
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	8, 160
SduI	GDGCHC	2 cut(s)	31, 165
SetI	ASST	7 cut(s)	31, 39, 178, 211, 267, 289, 375
SfaNI	GCATC	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	151, 200
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
SphI	GCATGC	2 cut(s)	108, 199
Sse9I	AATT	1 cut(s)	302
SspMI	CTAG	2 cut(s)	32, 366
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	6, 158
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	42, 267
TasI	AATT	1 cut(s)	302
TatI	WGTACW	2 cut(s)	94, 423
Tru1I	TTAA	3 cut(s)	54, 399, 458
Tru9I	TTAA	3 cut(s)	54, 399, 458
TseI	GCWGC	4 cut(s)	108, 242, 275, 284
TspDTI	ATGAA	2 cut(s)	90, 135
TspGWI	ACGGA	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	389
Vha464I	CTTAAG	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	2 cut(s)	108, 199
XspI	CTAG	2 cut(s)	32, 366
ZrmI	AGTACT	2 cut(s)	96, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.