Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

22430091 .. 22432270

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTGCAAGAAATAAACAGCAGACTCACAGATGCTGGTCACGTTCCTGATGATCTGGAAAATGTCCTGCTTGATGTTGATGAGAAGGAGAAACAGTACTTGCTCAGTCGACATAGTGAGAAACTGGCCATAGCTTTTGGGCTTATGGGTACAGGGCAAGGACTGCCAATTCGCGTGGTGACGAATTTGAATTCTGTGGCCATATTGTTTTGTGACTGCCTTATCGTGCAGCTTGCATTGGGTGAGGAAATACACATTCCTTGTGCACCCTGGAAGTTTTCTCCTTTCGGTTCAACTTATATGCAAAGCATACTTCCAGTTCAAGAAGTGAATTCAATTAAAGGGCCATGGCATCGTCGGAGCTCAGGTTCCGCTCGGATGTGGCTTGGCTTTTGCGCAAAGTACTCTAATGACGAAACACTGACGTTTCCGCTCTTTGGAGACGGTGCTGTAAATCAGGGACAGCTGTTCGAGGCGCTCAATATCTCTGCGCTTTGGGATTTGCCTGCGATTCTGATGGAATGGGAATCACAGAGTGGGGATCAGCCAAGAGTCCTGAAAATTGTTGCTGATGTGAAGGATTTCTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

198

Amino Acids

21.97

Weight (kDa)

4.83

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	13 - 65	2.3e-12	DYW family of nucleic acid deaminases
E1_dh	PF00676	130 - 173	3e-11	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	397
AccBSI	CCGCTC	2 cut(s)	374, 433
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	372, 431
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	126, 198
AcsI	RAATTY	3 cut(s)	184, 190, 331
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	3 cut(s)	98, 151, 404
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	4 cut(s)	190, 294, 323, 336
AjnI	CCWGG	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	4 cut(s)	134, 232, 363, 466
AluI	AGCT	4 cut(s)	134, 232, 363, 466
Alw21I	GWGCWC	2 cut(s)	268, 365
Alw26I	GTCTC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	3 cut(s)	126, 198, 344
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	184, 190, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	3 cut(s)	398, 478, 493
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	190, 254
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	2 cut(s)	128, 200
BanII	GRGCYC	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	268, 365
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	479
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmcAI	AGTACT	2 cut(s)	98, 404
Bme1390I	CCNGG	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	22, 361
Bpu10I	CCTNAGC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	269, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	129, 317
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	269, 347
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	118, 378
BseNI	ACTGG	2 cut(s)	129, 317
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	128, 200, 346
BsiHKAI	GWGCWC	2 cut(s)	268, 365
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	128, 200, 346
Bsp1286I	GDGCHC	2 cut(s)	268, 365
Bsp143I	GATC	2 cut(s)	52, 541
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	2 cut(s)	372, 431
BspANI	GGCC	3 cut(s)	128, 200, 346
BspCNI	CTCAG	2 cut(s)	117, 377
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	549
BsrBI	CCGCTC	2 cut(s)	374, 433
BsrI	ACTGG	2 cut(s)	129, 317
BssECI	CCNNGG	2 cut(s)	269, 347
BssMI	GATC	2 cut(s)	52, 541
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	96, 446
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	234, 507
BstDEI	CTNAG	2 cut(s)	104, 364
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	3 cut(s)	398, 478, 493
BstKTI	GATC	2 cut(s)	55, 544
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	2 cut(s)	52, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	128, 200, 346
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	234, 507
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	3 cut(s)	398, 478, 493
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	97, 150, 403
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	1 cut(s)	348
CviQI	GTAC	3 cut(s)	97, 150, 403
DdeI	CTNAG	2 cut(s)	104, 364
DpnI	GATC	2 cut(s)	54, 543
DpnII	GATC	2 cut(s)	52, 541
DraIII	CACNNNGTG	1 cut(s)	536
EaeI	YGGCCR	2 cut(s)	126, 198
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	363
EcoRI	GAATTC	2 cut(s)	190, 331
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	1 cut(s)	351
FaiI	YATR	9 cut(s)	114, 131, 146, 203, 300, 302, 311, 349, 588
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	230
FspI	TGCGCA	1 cut(s)	397
GlaI	GCGC	3 cut(s)	397, 477, 492
GluI	GCNGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	128, 200, 346
HhaI	GCGC	3 cut(s)	398, 478, 493
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	3 cut(s)	396, 476, 491
HinP1I	GCGC	3 cut(s)	396, 476, 491
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	4 cut(s)	24, 511, 527, 552
HphI	GGTGA	2 cut(s)	190, 254
Hpy166II	GTNNAC	2 cut(s)	110, 266
Hpy188I	TCNGA	3 cut(s)	360, 378, 516
Hpy188III	TCNNGA	4 cut(s)	47, 56, 323, 556
Hpy8I	GTNNAC	2 cut(s)	110, 266
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	79, 571
HpyCH4III	ACNGT	2 cut(s)	96, 446
HpyCH4IV	ACGT	2 cut(s)	42, 425
HpyCH4V	TGCA	5 cut(s)	7, 229, 236, 266, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	104, 364
HpySE526I	ACGT	2 cut(s)	42, 425
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	3 cut(s)	396, 476, 491
Kzo9I	GATC	2 cut(s)	52, 541
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	22, 361
MaeII	ACGT	2 cut(s)	42, 425
MaeIII	GTNAC	3 cut(s)	38, 178, 212
MalI	GATC	2 cut(s)	54, 543
MbiI	CCGCTC	2 cut(s)	374, 433
MboI	GATC	2 cut(s)	52, 541
MhlI	GDGCHC	2 cut(s)	268, 365
MlsI	TGGCCA	2 cut(s)	128, 200
MluCI	AATT	6 cut(s)	168, 184, 190, 331, 336, 561
MluNI	TGGCCA	2 cut(s)	128, 200
MlyI	GAGTC	2 cut(s)	18, 561
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	238, 466
Mox20I	TGGCCA	2 cut(s)	128, 200
MroXI	GAANNNNTTC	1 cut(s)	581
MscI	TGGCCA	2 cut(s)	128, 200
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	2 cut(s)	128, 200
MspA1I	CMGCKG	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	52, 541
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	38, 178, 212
NsbI	TGCGCA	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	511, 527
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	18, 560
PpsI	GAGTC	2 cut(s)	18, 560
Psp124BI	GAGCTC	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	3 cut(s)	98, 151, 404
RsaNI	GTAC	3 cut(s)	97, 150, 403
SacI	GAGCTC	1 cut(s)	365
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	52, 541
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	2 cut(s)	98, 404
SchI	GAGTC	2 cut(s)	18, 561
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	268, 365
SetI	ASST	7 cut(s)	45, 136, 234, 365, 370, 428, 468
SfaNI	GCATC	2 cut(s)	22, 361
Sse9I	AATT	6 cut(s)	168, 184, 190, 331, 336, 561
SsiI	CCGC	2 cut(s)	372, 431
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	96, 446
TaiI	ACGT	2 cut(s)	45, 428
TaqI	TCGA	2 cut(s)	109, 471
TasI	AATT	6 cut(s)	168, 184, 190, 331, 336, 561
TatI	WGTACW	2 cut(s)	96, 402
TfiI	GAWTC	2 cut(s)	511, 527
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	3 cut(s)	38, 178, 212
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	3 cut(s)	38, 178, 212
TspRI	CASTG	1 cut(s)	426
VneI	GTGCAC	1 cut(s)	264
XapI	RAATTY	3 cut(s)	184, 190, 331
XmiI	GTMKAC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	581
ZrmI	AGTACT	2 cut(s)	98, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.