RLG00000023351

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008887
Physical Location & Seq
Reverse (-)
22343413 .. 22347571
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023351

Sequence Viewer

Length: 756 bp
ATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGTCACGTTCCTGATCTGGACAATGTCCTGCTTGATGTTGATGAGAAGGAGAAAGAGTACTTGCTCAGTCGACATAGTGAGAAACTGGCCATAGCTTTTGGGCTTATAGGTAGGCAAGGAGTGCCAATTCACGTGGTGAAGAATTTGAGAATTTGTTCTGATTGTCACTCTTTTGCCAAATTAGTATCAAGAATATACGACAGGGAAATTATTGTTCGAGATAACGACAGATGGAATGGGAATGACAGAGTAGAGAGCTGCCAAGAGTCGTGGTTTGCAGTGGCTTTTGATTCACATGGAAAGTATTATGGTGCAGATGGATTGGAAGGAAATATAAAGAGGCGTTTAGGCATCTTCACTGCCATCGCCAACTTCTTTGATTTCCAAGACCATAGATGGAACTGCAAAGCTCAGATTTACAAAAGCCCCAACATTGCAAGTCTGGCCATTGCTGCTTATTGTCAGACGTGCGTCACGCGCCATTTAACTTTCTATGGGCTTAGATCTACGAAAGCTTCTCAACAGAAAAGAGAAGAAAAACAATGGATGATACCTGTGCTGTCTGTGCGGAGACACTTCATTGGGCTGGGCCCTGGCCATCGAGAGGTCTGCTCTACCTGCATTTTTCGGCTCCGTTTCATCTGTGGAGATTCCCATTGCTGCCTCTGCAAGAGTGAATCTAAGATCATCTTCATCGCCAAGGTTGGGCATCAGTTGTAA

Protein Analysis

252

Amino Acids

28.81

Weight (kDa)

8.91

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 13 - 103 6.8e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 106
AccII CGCG 1 cut(s) 514
AciI CCGC 1 cut(s) 604
AcoI YGGCCR 3 cut(s) 123, 480, 631
AcsI RAATTY 2 cut(s) 178, 186
AcvI CACGTG 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 640, 741
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 4 cut(s) 131, 294, 446, 551
AluI AGCT 4 cut(s) 131, 294, 446, 551
Alw26I GTCTC 1 cut(s) 601
AoxI GGCC 4 cut(s) 123, 480, 625, 631
ApaI GGGCCC 1 cut(s) 629
ApeKI GCWGC 3 cut(s) 294, 488, 696
ApoI RAATTY 2 cut(s) 178, 186
Asp700I GAANNNNTTC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 2 cut(s) 625, 626
AsuHPI GGTGA 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 629
BalI TGGCCA 3 cut(s) 125, 482, 633
BanII GRGCYC 1 cut(s) 629
BbrPI CACGTG 1 cut(s) 169
BbvI GCAGC 3 cut(s) 281, 475, 683
BccI CCATC 5 cut(s) 261, 347, 407, 426, 642
BcgI CGANNNNNNTGC 2 cut(s) 627, 661
BciT130I CCWGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 662
BglII AGATCT 1 cut(s) 539
BisI GCNGC 3 cut(s) 295, 489, 697
BlsI GCNGC 3 cut(s) 296, 490, 698
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 625, 626
BmiI GGNNCC 2 cut(s) 627, 668
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 22, 396
BoxI GACNNNNGTC 1 cut(s) 506
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BsaAI YACGTR 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 628, 735
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 741
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 3 cut(s) 468, 483, 691
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 628, 735
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 640, 741
BseMI GCAATG 3 cut(s) 468, 483, 691
BseMII CTCAG 3 cut(s) 40, 115, 461
BseNI ACTGG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 629
BseXI GCAGC 3 cut(s) 281, 475, 683
BseYI CCCAGC 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 4 cut(s) 125, 482, 627, 633
BslI CCNNNNNNNGG 2 cut(s) 640, 741
BsmAI GTCTC 1 cut(s) 601
BsnI GGCC 4 cut(s) 125, 482, 627, 633
Bsp120I GGGCCC 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 629
Bsp143I GATC 3 cut(s) 49, 539, 720
BspACI CCGC 1 cut(s) 604
BspANI GGCC 4 cut(s) 125, 482, 627, 633
BspCNI CTCAG 3 cut(s) 39, 114, 460
BspFNI CGCG 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 627, 668
BspMI ACCTGC 1 cut(s) 662
BsrDI GCAATG 3 cut(s) 468, 483, 691
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 628, 735
BssMI GATC 3 cut(s) 49, 539, 720
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 169
BstDEI CTNAG 5 cut(s) 26, 101, 447, 536, 717
BstF5I GGATG 1 cut(s) 588
BstFNI CGCG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 52, 542, 723
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 3 cut(s) 49, 539, 720
BstMWI GCNNNNNNNGC 7 cut(s) 157, 479, 488, 513, 601, 654, 702
BstNI CCWGG 1 cut(s) 630
BstPAI GACNNNNGTC 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 629
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 3 cut(s) 281, 475, 683
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 4 cut(s) 125, 482, 627, 633
BtgZI GCGATG 2 cut(s) 385, 715
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 1 cut(s) 588
BtsI GCAGTG 2 cut(s) 321, 393
BtsIMutI CAGTG 2 cut(s) 321, 393
BveI ACCTGC 1 cut(s) 662
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 625, 626
CseI GACGC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 4 cut(s) 150, 185, 287, 322
CviAII CATG 1 cut(s) 332
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 5 cut(s) 26, 101, 447, 536, 717
DpnI GATC 3 cut(s) 51, 541, 722
DpnII GATC 3 cut(s) 49, 539, 720
DraIII CACNNNGTG 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 123, 480, 631
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 1 cut(s) 335
FaiI YATR 9 cut(s) 111, 128, 143, 232, 333, 345, 371, 429, 531
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FatI CATG 1 cut(s) 331
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 295, 489, 697
FokI GGATG 1 cut(s) 595
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 3 cut(s) 295, 489, 697
GlaI GCGC 1 cut(s) 515
GluI GCNGC 3 cut(s) 295, 489, 697
GsaI CCCAGC 1 cut(s) 626
HaeIII GGCC 4 cut(s) 125, 482, 627, 633
HgaI GACGC 1 cut(s) 496
HhaI GCGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 335
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 5 cut(s) 24, 302, 326, 686, 713
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 4 cut(s) 29, 196, 450, 501
Hpy188III TCNNGA 5 cut(s) 47, 53, 225, 254, 638
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 76, 356
HpyCH4IV ACGT 3 cut(s) 42, 168, 503
HpyCH4V TGCA 7 cut(s) 7, 314, 350, 441, 473, 657, 705
HpyF10VI GCNNNNNNNGC 7 cut(s) 157, 479, 488, 513, 601, 654, 702
HpyF3I CTNAG 5 cut(s) 26, 101, 447, 536, 717
HpySE526I ACGT 3 cut(s) 42, 168, 503
Hsp92II CATG 1 cut(s) 335
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 49, 539, 720
LmnI GCTCC 1 cut(s) 672
Lsp1109I GCAGC 3 cut(s) 281, 475, 683
LweI GCATC 2 cut(s) 22, 396
MaeII ACGT 3 cut(s) 42, 168, 503
MaeIII GTNAC 3 cut(s) 38, 200, 508
MalI GATC 3 cut(s) 51, 541, 722
MboI GATC 3 cut(s) 49, 539, 720
MboII GAAGA 4 cut(s) 187, 382, 581, 718
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 629
MlsI TGGCCA 3 cut(s) 125, 482, 633
MluCI AATT 5 cut(s) 162, 178, 186, 215, 243
MluNI TGGCCA 3 cut(s) 125, 482, 633
MlyI GAGTC 2 cut(s) 18, 311
MnlI CCTC 3 cut(s) 369, 634, 710
Mox20I TGGCCA 3 cut(s) 125, 482, 633
MroXI GAANNNNTTC 1 cut(s) 190
MscI TGGCCA 3 cut(s) 125, 482, 633
MseI TTAA 1 cut(s) 521
Msp20I TGGCCA 3 cut(s) 125, 482, 633
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 7 cut(s) 157, 479, 488, 513, 601, 654, 702
NdeII GATC 3 cut(s) 49, 539, 720
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 627, 668
NmuCI GTSAC 3 cut(s) 38, 200, 508
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 3 cut(s) 326, 686, 713
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 296, 490, 698
PleI GAGTC 2 cut(s) 18, 310
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
PpsI GAGTC 2 cut(s) 18, 310
Ppu21I YACGTR 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 628
PspCI CACGTG 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 627, 668
PspOMI GGGCCC 1 cut(s) 625
PspPI GGNCC 2 cut(s) 625, 626
PsuI RGATCY 1 cut(s) 539
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SalI GTCGAC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 3 cut(s) 295, 489, 697
Sau3AI GATC 3 cut(s) 49, 539, 720
Sau96I GGNCC 2 cut(s) 625, 626
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 2 cut(s) 18, 311
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 1 cut(s) 629
SfaNI GCATC 2 cut(s) 22, 396
Sse9I AATT 5 cut(s) 162, 178, 186, 215, 243
SsiI CCGC 1 cut(s) 604
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 735
TaiI ACGT 3 cut(s) 45, 171, 506
TaqI TCGA 3 cut(s) 106, 253, 637
TasI AATT 5 cut(s) 162, 178, 186, 215, 243
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 3 cut(s) 326, 686, 713
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 2 cut(s) 321, 400
TseFI GTSAC 3 cut(s) 38, 200, 508
TseI GCWGC 3 cut(s) 294, 488, 696
Tsp45I GTSAC 3 cut(s) 38, 200, 508
TspDTI ATGAA 3 cut(s) 604, 664, 718
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 2 cut(s) 321, 400
Tth111I GACNNNGTC 1 cut(s) 59
XapI RAATTY 2 cut(s) 178, 186
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 190
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.