Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

9477 .. 9854

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggcatacattgcaaaagtgaggctacaattgaaagagaaagggattcagaaggtaccggatccagttccattgaaattaatggagtgattcatgagtttatctccggtggtgatactgatacacgcacagagaagagccacattgcgttgatgttgcaagaaataaacagcagactcagagatgccggtcaccttactgatttggacaatgtcctgcttgatgttgatgagaaggagaaagagttcttgctcagtcaacatactgagaaagtggccatagcttttaggcttataggtacagggcaagaagtgccaattcgcgtggtgaagaatctgggagaatgtgttctgattgtcactcttttgccaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

125

Amino Acids

13.81

Weight (kDa)

4.93

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	324
AclWI	GGATC	2 cut(s)	57, 70
AcoI	YGGCCR	1 cut(s)	276
AfaI	GTAC	2 cut(s)	58, 301
AgsI	TTSAA	2 cut(s)	35, 77
AloI	GAACNNNNNNTCC	4 cut(s)	230, 262, 333, 365
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
AlwI	GGATC	2 cut(s)	57, 70
AoxI	GGCC	1 cut(s)	276
AseI	ATTAAT	1 cut(s)	81
Asp700I	GAANNNNTTC	2 cut(s)	245, 348
Asp718I	GGTACC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	125, 185, 340
BalI	TGGCCA	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	58, 64
BmsI	GCATC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BsaWI	WCCGGW	2 cut(s)	59, 107
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 333, 363
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	10, 144
BseMI	GCAATG	2 cut(s)	10, 144
BseMII	CTCAG	3 cut(s)	193, 258, 268
BseNI	ACTGG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	60, 108, 189
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	192, 259, 267
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	58, 64
BspPI	GGATC	2 cut(s)	57, 70
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	10, 144
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	2 cut(s)	12, 313
BstDEI	CTNAG	3 cut(s)	179, 254, 267
BstEII	GGTNACC	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 313
BstPI	GGTNACC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	57, 300
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	5 cut(s)	26, 141, 278, 284, 292
CviKI_1	RGCY	5 cut(s)	26, 141, 278, 284, 292
CviQI	GTAC	2 cut(s)	57, 300
DdeI	CTNAG	3 cut(s)	179, 254, 267
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
FaeI	CATG	1 cut(s)	98
FaiI	YATR	5 cut(s)	8, 96, 264, 281, 296
FatI	CATG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	3 cut(s)	60, 108, 189
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HinfI	GANTC	4 cut(s)	47, 91, 177, 334
HpaII	CCGG	3 cut(s)	60, 108, 189
HphI	GGTGA	3 cut(s)	125, 185, 340
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	52, 182, 354
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	47, 229
HpyCH4V	TGCA	2 cut(s)	15, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 313
HpyF3I	CTNAG	3 cut(s)	179, 254, 267
Hsp92II	CATG	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	62
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	73, 79, 121, 202, 230, 288, 323
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	191, 358
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	148, 343
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	4 cut(s)	30, 78, 318, 373
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	1 cut(s)	16
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	2 cut(s)	245, 348
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	3 cut(s)	60, 108, 189
MunI	CAATTG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	12, 313
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	58, 64
NmuCI	GTSAC	2 cut(s)	191, 358
PagI	TCATGA	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	131
PdmI	GAANNNNTTC	2 cut(s)	245, 348
PfeI	GAWTC	3 cut(s)	47, 91, 334
PflFI	GACNNNGTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	58, 64
PsuI	RGATCY	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	2 cut(s)	58, 301
RsaNI	GTAC	2 cut(s)	57, 300
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	171
SetI	ASST	4 cut(s)	58, 198, 286, 301
SfaNI	GCATC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	30, 78, 318, 373
TasI	AATT	4 cut(s)	30, 78, 318, 373
TfiI	GAWTC	3 cut(s)	47, 91, 334
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	191, 358
Tsp45I	GTSAC	2 cut(s)	191, 358
TspDTI	ATGAA	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	81
XmnI	GAANNNNTTC	2 cut(s)	245, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.