Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008380.1

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

21137 .. 22493

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008380.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggctgcaatgcttcaactaaccaaaacgaagcaccttccaaagccttccacttgttccttgaagaagaagaaatacaggctccataggtggtttgtgaagatgggttttgaggaagatgtgtttcttggggattctttgattcatttatgtgcagtgtgggacatggattatgcccagaagctgttcgatgaaatgcttgagaaaaatactgtgtcgtggactagtttgatttgtggttatggtggaggaatatgccaaaggaggctgttttctttgtttccgagagggtggctgccgttggtccatggcatttcccctcatactgttcatttcggttgcatggtctatctactaggccgagccgggttcttggaagaagatgttgatctgataaagtgcatgccaatggaacctaatgatgtcatttggggttgtctcttggctgtgtgtcgaacccacaaaaaggtcgaaatggcagcatatgcagctgaacagatatcaaaattgacagagaagagccacattgcgttgatgtttcaagaaataaacagcagactcagagatgctagtcacgttccttatttggacaatgtcctggttaatgttgatgagaaggagaaagagtacttgctattcaccaaccttacctcgtcccacttcagggttccgagaagaatgccatgcattcagatgtatcctttcagagacagagagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

240

Amino Acids

27.89

Weight (kDa)

8.52

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	646
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	3 cut(s)	466, 663, 664
AgsI	TTSAA	3 cut(s)	17, 64, 542
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	184, 491
AluI	AGCT	2 cut(s)	184, 491
Alw26I	GTCTC	2 cut(s)	443, 702
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	5, 295, 479, 488
Asp700I	GAANNNNTTC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbvI	GCAGC	3 cut(s)	282, 491, 500
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	443, 702
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	225, 356, 570
BfuI	GTATCC	1 cut(s)	708
BisI	GCNGC	4 cut(s)	6, 296, 480, 489
BlsI	GCNGC	4 cut(s)	7, 297, 481, 490
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	367, 599
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	83, 414, 669
BmrFI	CCNGG	2 cut(s)	367, 599
BmsI	GCATC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 663, 664
Bse3DI	GCAATG	2 cut(s)	15, 525
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	466, 663, 664
BseMI	GCAATG	2 cut(s)	15, 525
BseMII	CTCAG	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	282, 491, 500
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	176, 640
BslI	CCNNNNNNNGG	3 cut(s)	466, 663, 664
BsmAI	GTCTC	2 cut(s)	443, 702
BsmFI	GGGAC	2 cut(s)	176, 640
BsmI	GAATGC	2 cut(s)	684, 687
BsnI	GGCC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	307
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	83, 414, 669
BspQI	GCTCTTC	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	15, 525
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	214, 328
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	443, 702
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 488
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	365, 597
BstV1I	GCAGC	3 cut(s)	282, 491, 500
BsuI	GTATCC	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	5 cut(s)	166, 308, 343, 403, 684
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	5 cut(s)	169, 311, 346, 406, 687
FaqI	GGGAC	2 cut(s)	176, 640
FatI	CATG	5 cut(s)	165, 307, 342, 402, 683
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	6, 296, 480, 489
Fsp4HI	GCNGC	4 cut(s)	6, 296, 480, 489
FspBI	CTAG	3 cut(s)	225, 356, 570
GluI	GCNGC	4 cut(s)	6, 296, 480, 489
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	5 cut(s)	169, 311, 346, 406, 687
HinfI	GANTC	3 cut(s)	134, 142, 558
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	6 cut(s)	285, 393, 563, 672, 693, 707
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	47, 57, 610
HpyCH4III	ACNGT	2 cut(s)	214, 328
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	6 cut(s)	8, 155, 342, 402, 488, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 488
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	5 cut(s)	169, 311, 346, 406, 687
Kzo9I	GATC	1 cut(s)	388
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	64, 191, 379, 584, 611, 649
Lsp1109I	GCAGC	3 cut(s)	282, 491, 500
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	225, 356, 570
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	9 cut(s)	76, 79, 82, 112, 128, 389, 392, 529, 687
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	552
MnlI	CCTC	6 cut(s)	106, 242, 258, 281, 330, 661
Mph1103I	ATGCAT	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	3 cut(s)	150, 407, 692
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	367, 599
Mva1269I	GAATGC	2 cut(s)	684, 687
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	485, 488
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	5 cut(s)	169, 311, 346, 406, 687
NlaIV	GGNNCC	3 cut(s)	83, 414, 669
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	689
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	512
PctI	GAATGC	2 cut(s)	684, 687
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	134, 142
PflFI	GACNNNGTC	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	7, 297, 481, 490
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	83, 414, 669
PspPI	GGNCC	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	3 cut(s)	150, 407, 692
SapI	GCTCTTC	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	4 cut(s)	6, 296, 480, 489
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	367, 599
SetI	ASST	9 cut(s)	39, 92, 186, 418, 471, 493, 579, 648, 653
SfaNI	GCATC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	3 cut(s)	150, 407, 692
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	224
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	225, 356, 570
StyD4I	CCNGG	2 cut(s)	365, 597
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	214, 328
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	189, 454, 471
TasI	AATT	1 cut(s)	506
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	134, 142
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	4 cut(s)	5, 295, 479, 488
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	134, 207, 320
TspRI	CASTG	1 cut(s)	162
Tth111I	GACNNNGTC	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	3 cut(s)	225, 356, 570
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.