Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

3246087 .. 3246404

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTACAAGAAATAAACAGCAGACTCAGAGATGTTGGTCACGTTCCTGATTTGGACAGTGTCCCCCTTGATGTTGATGAGAAGAAGAAAGAGTACTTGCTCAGTCGACATAGTGAGAAAGTGGCCATAGCTTCTGGGTTTATTGGTAGAGGGGAAGGTGTGCCAATTTGCATGGTGAAGAATCTGAGAATGTGTTGTGATTGTCACTCTTTTGCCAAATTAGTGTCAAGAATATACGACAGGGAAGTTATTGTTCAAGATAACAACACGTTCCATTTCTTTAGGCAGGGGCTTTGCTCTTGCAGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

105

Amino Acids

12.08

Weight (kDa)

6.4

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	13 - 105	5.7e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BmcAI	AGTACT	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	40, 115, 176
BseNI	ACTGG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	3 cut(s)	39, 114, 177
BsrI	ACTGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	26, 101, 185
BsuRI	GGCC	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	64, 310
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	3 cut(s)	125, 131, 292
CviKI_1	RGCY	3 cut(s)	125, 131, 292
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	26, 101, 185
EaeI	YGGCCR	1 cut(s)	123
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	111, 128, 173, 235
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	24, 181
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	29, 186
Hpy188III	TCNNGA	3 cut(s)	47, 228, 257
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	42, 269
HpyCH4V	TGCA	2 cut(s)	171, 303
HpyF3I	CTNAG	3 cut(s)	26, 101, 185
HpySE526I	ACGT	2 cut(s)	42, 269
Hsp92II	CATG	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	60, 120, 226, 272, 298
MaeII	ACGT	2 cut(s)	42, 269
MaeIII	GTNAC	3 cut(s)	3, 38, 203
MboII	GAAGA	3 cut(s)	94, 97, 190
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	2 cut(s)	165, 218
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	38, 203
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	18
SetI	ASST	4 cut(s)	45, 133, 160, 272
Sse9I	AATT	2 cut(s)	165, 218
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	45, 272
TaqI	TCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	165, 218
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	2 cut(s)	64, 310
TseFI	GTSAC	2 cut(s)	38, 203
Tsp45I	GTSAC	2 cut(s)	38, 203
TspRI	CASTG	2 cut(s)	64, 310
Tth111I	GACNNNGTC	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.