Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

10200172 .. 10200655

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATAAAGGGACTCAGAAGGTACCCGGATCCAGTTCTATTGGAAGTTAATGGAGTGATTCATGAATTTACCTCCGGTGGTGATACTGATACACACACAGAGAAGAGCCATATTGCATTGATGTTGCAAAAAATAAACAGCATACTCAGAGATGCTGGTCATGTTCCTGATTTTGACAATGTCCTGCTTGATGTTGATTTGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

69

Amino Acids

7.74

Weight (kDa)

5.15

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	23, 36
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	202
AlwI	GGATC	2 cut(s)	23, 36
ApoI	RAATTY	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	23, 30
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	28, 160
BseNI	ACTGG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	26, 75
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	27, 159
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	23, 30
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	14, 146
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
CciI	TCATGA	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	62, 161
CviJI	RGCY	1 cut(s)	108
CviKI_1	RGCY	1 cut(s)	108
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	14, 146
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	65, 164
FaiI	YATR	4 cut(s)	63, 111, 143, 162
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	61, 160
HapII	CCGG	2 cut(s)	26, 75
Hin1II	CATG	2 cut(s)	65, 164
HinfI	GANTC	2 cut(s)	12, 58
HpaII	CCGG	2 cut(s)	26, 75
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	17, 149
Hpy188III	TCNNGA	2 cut(s)	62, 167
HpyAV	CCTTC	2 cut(s)	12, 196
HpyCH4V	TGCA	2 cut(s)	116, 127
HpyF3I	CTNAG	2 cut(s)	14, 146
Hsp92II	CATG	2 cut(s)	65, 164
KpnI	GGTACC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	39, 45, 88, 141, 180, 197
LweI	GCATC	1 cut(s)	142
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	6
MnlI	CCTC	1 cut(s)	82
MseI	TTAA	1 cut(s)	48
MspI	CCGG	2 cut(s)	26, 75
MspR9I	CCNGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	65, 164
NlaIV	GGNNCC	2 cut(s)	23, 30
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	58
PflFI	GACNNNGTC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	23, 30
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	2 cut(s)	23, 74
SfaNI	GCATC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	50, 78
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.