Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

6780379 .. 6782299

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGAATGTTAGAGAGACCAGGTGTATTGTTAAGAGAAGCTGGGTACTGCCCTGATAGCAGCTTTGTGTTGCATGATGTGGATGAAGAAGAGAAGGTCCAGAGCTTGGGTTATCACAGTGAGAAGCTGGCAATAGCGTATGGACTCCTTAAGGTGCCACAAGGGATACCCATTCGGGTGATGAAGAATCTTCGGGTTTGTGGGGATTGCCATTCTGCAATTAAACTAATAGCCAAAGCTACTGGGAGAGAGATCATTGTGAGGGATGCTAACAGATTTCATCATTTTAAGGATGGCTTGTGTTCTTGCCGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

107

Amino Acids

12.19

Weight (kDa)

8.31

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	15 - 107	5.4e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	5 cut(s)	41, 63, 105, 127, 239
AluI	AGCT	5 cut(s)	41, 63, 105, 127, 239
Alw26I	GTCTC	2 cut(s)	10, 306
ApeKI	GCWGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	21
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	10, 306
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	88, 271, 298
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	10, 306
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	88, 271, 298
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	10, 306
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	88, 271, 298
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	41, 63, 105, 127, 233, 239, 297
CviKI_1	RGCY	7 cut(s)	41, 63, 105, 127, 233, 239, 297
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 141
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	3 cut(s)	95, 278, 305
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	2 cut(s)	144, 187
HphI	GGTGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	73, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	7 cut(s)	6, 27, 33, 66, 113, 113, 228
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	19
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	98, 101, 182, 196
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	255
MseI	TTAA	4 cut(s)	32, 150, 222, 288
MslI	CAYNNNNRTG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	32, 150, 222, 288
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	8 cut(s)	25, 43, 65, 99, 107, 129, 156, 241
SexAI	ACCWGGT	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	119
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	4 cut(s)	32, 150, 222, 288
Tru9I	TTAA	4 cut(s)	32, 150, 222, 288
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	99, 197, 269
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.