Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7995176.1

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 480

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7995176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 257 bp

atgattaaagacttgaaatctgcagggtattcacctgatacgtccgaggtttttcttgatgtaggggaagagaataaagagagtgcagtttataagcacagtgagaagttagcaattgcgtttggattgattagtttaggacctggggtgactattagagtcatgaagaacctcagaatctgcgtggattgtcacagcatggcaaagctggtttccaaggtgtatgatagagaagtgattgttagggatggaactcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

86

Amino Acids

9.53

Weight (kDa)

7.78

Isoelectric Point (pI)

19.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	24, 160
AvaII	GGWCC	1 cut(s)	140
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	45, 143, 216
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	45, 143, 216
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	45, 143, 216
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	140
CviAII	CATG	2 cut(s)	163, 199
CviJI	RGCY	1 cut(s)	208
CviKI_1	RGCY	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	166, 202
FaiI	YATR	4 cut(s)	93, 164, 200, 225
FatI	CATG	2 cut(s)	162, 198
Hin1II	CATG	2 cut(s)	166, 202
HinfI	GANTC	2 cut(s)	159, 177
HphI	GGTGA	2 cut(s)	24, 160
Hpy188I	TCNGA	2 cut(s)	46, 176
Hpy188III	TCNNGA	2 cut(s)	56, 163
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	23, 86
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	166, 202
LpnPI	CCDG	5 cut(s)	9, 48, 129, 156, 194
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	148, 191
MboII	GAAGA	2 cut(s)	80, 178
MfeI	CAATTG	1 cut(s)	114
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	40, 182
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	144
NlaIII	CATG	2 cut(s)	166, 202
NmuCI	GTSAC	2 cut(s)	148, 191
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	140
PspPPI	RGGWCCY	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	7 cut(s)	37, 44, 51, 145, 174, 210, 222
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	44
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	148, 191
Tsp45I	GTSAC	2 cut(s)	148, 191
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.