Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

1998337 .. 1998759

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGATTCAGAAGGTACCCGGATCCAGATACATTGAAGTTAATGGAGTTTTCCTCTGGTGGTGATACTGATACACACACAGAGAAGAGCCACATTGCGTTGATGTTGCAAGAAATAAACAGCAGACACAGAGATGCTGGTCACATTCCTGATTTGGACAAAGTCCTGCTTGATAAAGTGGCCATAGATTTTGGACTTATAGGAACAGGGCAAGGAGTGCTAATTCCTGTGGTGAAGAATCTCAGAATGTGTTCTGATTGTCACTCTTTTGCCAAATTAGTGTCGAGAATATACGACAGGGAAATATTTGTTCCAGATGACAATGGCTTCCATTTCTTTTGTCAGCAGGGGCTTTGCTCTTGCAGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

5.57

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	58 - 125	1.4e-22	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	180
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	37
AlwI	GGATC	2 cut(s)	17, 30
AoxI	GGCC	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	250
Asp718I	GGTACC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	74, 244
BalI	TGGCCA	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	17, 24
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuMI	CCSGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	17, 24
BspPI	GGATC	2 cut(s)	17, 30
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	4 cut(s)	90, 182, 327, 352
CviKI_1	RGCY	4 cut(s)	90, 182, 327, 352
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
FaiI	YATR	3 cut(s)	185, 200, 292
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	20
HinfI	GANTC	2 cut(s)	6, 238
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	74, 244
Hpy188I	TCNGA	3 cut(s)	11, 245, 256
Hpy188III	TCNNGA	4 cut(s)	26, 149, 285, 314
HpyAV	CCTTC	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	109, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	80
LweI	GCATC	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	140, 260
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	97, 247
MflI	RGATCY	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	222, 275
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	1 cut(s)	64
Mox20I	TGGCCA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	17, 24
NmuCI	GTSAC	2 cut(s)	140, 260
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	6, 238
PflFI	GACNNNGTC	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	17, 24
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	222, 275
SspI	AATATT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	1 cut(s)	284
TasI	AATT	2 cut(s)	222, 275
TfiI	GAWTC	2 cut(s)	6, 238
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	140, 260
Tsp45I	GTSAC	2 cut(s)	140, 260
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.