Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

32682725 .. 32683012

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTACCACAAAATCTCTGACTGCTACTAAGAAAGTGGTTATTCATCTGAGAGCTACTGGCGATGCCCCTATACTAAAGCAAGCCAAATTCAAGATACTTGTAACGGACAAGTTTGCTAAAGTGACTGACTTTTTAAGGAGGCAACTTCACCGAGATACGTTATTTGTGTATGTCAATAGTGCATTCTCACCAAACCCAGATGAATTGGTGATGGATCTGTATAATAATTTTGGTTTTGATGGTAAACTGGTAGTCAATTATGCTTGTTCCATTGCGTGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

9.56

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 95	5.2e-33	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	143, 183, 223
BccI	CCATC	2 cut(s)	208, 236
BmsI	GCATC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	64, 255
Bse3DI	GCAATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	64, 255
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	64, 255
BssMI	GATC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	30, 50
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	84
CviJI	RGCY	3 cut(s)	56, 86, 285
CviKI_1	RGCY	3 cut(s)	56, 86, 285
DdeI	CTNAG	2 cut(s)	30, 50
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
FaiI	YATR	4 cut(s)	74, 174, 225, 264
FblI	GTMKAC	1 cut(s)	5
HphI	GGTGA	3 cut(s)	143, 183, 223
Hpy166II	GTNNAC	2 cut(s)	6, 248
Hpy188I	TCNGA	2 cut(s)	21, 51
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	6, 248
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	30, 50
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	45, 213, 236
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	103, 124
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	4 cut(s)	89, 206, 229, 259
MnlI	CCTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	217
SetI	ASST	2 cut(s)	58, 164
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	9 cut(s)	72, 95, 106, 113, 124, 167, 212, 263, 279
Sse9I	AATT	4 cut(s)	89, 206, 229, 259
TaiI	ACGT	1 cut(s)	164
TasI	AATT	4 cut(s)	89, 206, 229, 259
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	35, 219
TspGWI	ACGGA	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.