Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Reverse (-)

62884026 .. 62884343

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTGCAAGAAATAAACAGCAGACTCAGAGATGTTGGTCACGTTCCTGAGTTGGACAATGTCCTCCTTGATGTTGATGAGAAGAAGAAAGAGTACTTGCTCAGTCGACATAGTGAGAAAGTGGCCATAGCTTCTGGGCTTATTGGTACAGGGCAAGGTGTGCCAATTTGCATGGTGAAGAATCTGAGAATGTGTTGTGATTGTCACTCTTTTGCCAAATTAGTGTCAAGAACATACGACAGGGAAGTTATTGTTCAAGATAACAACACGTTCCATTTCTTTAGTCAGGGGCTTTGCTTTTGCAGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

6.04

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	13 - 105	3.9e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	2 cut(s)	95, 148
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BmcAI	AGTACT	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	317
BseMII	CTCAG	4 cut(s)	39, 40, 115, 176
BseNI	ACTGG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	39, 40, 114, 177
BsrI	ACTGG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstDEI	CTNAG	4 cut(s)	26, 48, 101, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	94, 147
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	125, 131, 139, 292
CviKI_1	RGCY	4 cut(s)	125, 131, 139, 292
CviQI	GTAC	2 cut(s)	94, 147
DdeI	CTNAG	4 cut(s)	26, 48, 101, 185
EaeI	YGGCCR	1 cut(s)	123
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	111, 128, 173, 235
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	24, 181
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	29, 186
Hpy188III	TCNNGA	3 cut(s)	47, 228, 257
Hpy8I	GTNNAC	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	42, 269
HpyCH4V	TGCA	3 cut(s)	7, 171, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	4 cut(s)	26, 48, 101, 185
HpySE526I	ACGT	2 cut(s)	42, 269
Hsp92II	CATG	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	60, 120, 135, 226, 272, 298
MaeII	ACGT	2 cut(s)	42, 269
MaeIII	GTNAC	2 cut(s)	38, 203
MboII	GAAGA	3 cut(s)	94, 97, 190
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	2 cut(s)	165, 218
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	38, 203
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	95, 148
RsaNI	GTAC	2 cut(s)	94, 147
SalI	GTCGAC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	18
SetI	ASST	4 cut(s)	45, 133, 160, 272
Sse9I	AATT	2 cut(s)	165, 218
TaiI	ACGT	2 cut(s)	45, 272
TaqI	TCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	165, 218
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	38, 203
Tsp45I	GTSAC	2 cut(s)	38, 203
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.