Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008887

Physical Location & Seq

Genomic Coordinates Forward (+)

18775176 .. 18775613

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTGACCAGAGGATTAAGAAAGCTCCAGGATGGAGTGTGATTGAAGTTGACCGGGTCATGTATAGTTTTATGGCTGGTAAACAATCAAATAAAATTACAGAAGAGGCTTATGAGAAGCTACGGGGGATAATGTTAAAACTTAGGGTTGAAGGAGGCTATGTTCCAGAGGTTAGGAGTGTTTTGCATGACATAGAAGAAGAGGATAAAGAAGATTCAGTTTTCAGGCACAGCGAGAAACTTGCTGTAGCTTTTGGGTTGGCAAGACAGCGTGAAGGGCAGATTATAAGGATTGTGAAGAATTTACGGGTCTGTAGGGACTGTCATACGGTGATGAAGCTGATTTCTAAGGTTTATGGAGTGGAGATAGTGGTGAGAGATAGAAGCCGTTTTCACTCCTTCAAGGATGGCTATTGTTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

146

Amino Acids

16.93

Weight (kDa)

9.04

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	53 - 145	1.3e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008887)

Species	Orthologous Gene IDs
malus_domestica	MD00G1181600.v1.1
pyrus_communis	pycom14g16560
rosa_chinensis	RchiOBHm_Chr1g0328861 RchiOBHm_Chr1g0329111 RchiOBHm_Chr3g0457841 RchiOBHm_Chr4g0386501 RchiOBHm_Chr4g0388071 RchiOBHm_Chr4g0394521
rosa_laevigata	RLG00000010088 RLG00000023351 RLG00000023354
rosa_multiflora	Rmu_co7995176.1_g000001 Rmu_sc0001942.1_g000035 Rmu_sc0006648.1_g000002 Rmu_sc0008380.1_g000004 Rmu_sc0014755.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333990 Rroxscaffold_5G00334610
rosa_rugosa	Rorug03G0307400 Rorug03G0307700 Rorug03G0364900.1
rosa_samantha	Rh4BG050700 Rh4DG010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	47, 152, 403
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	26, 121, 251, 340
AluI	AGCT	4 cut(s)	26, 121, 251, 340
ApoI	RAATTY	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	343, 385
BccI	CCATC	2 cut(s)	27, 401
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	246, 313
Bme1390I	CCNGG	2 cut(s)	30, 56
BmrFI	CCNGG	2 cut(s)	30, 56
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	38, 412
BseNI	ACTGG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	323, 331
Bst6I	CTCTTC	2 cut(s)	99, 195
BstDEI	CTNAG	2 cut(s)	143, 348
BstF5I	GGATG	2 cut(s)	38, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 54
BstSFI	CTRYAG	2 cut(s)	246, 313
BtsCI	GGATG	2 cut(s)	38, 412
CviAII	CATG	3 cut(s)	61, 188, 420
DdeI	CTNAG	2 cut(s)	143, 348
Eam1104I	CTCTTC	2 cut(s)	99, 195
EarI	CTCTTC	2 cut(s)	99, 195
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	64, 191, 423
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	60, 187, 419
FokI	GGATG	2 cut(s)	45, 419
GsuI	CTGGAG	1 cut(s)	12
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	64, 191, 423
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	343, 385
Hpy166II	GTNNAC	2 cut(s)	52, 83
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	52, 83
HpyAV	CCTTC	3 cut(s)	146, 269, 409
HpyCH4III	ACNGT	2 cut(s)	323, 331
HpyCH4V	TGCA	2 cut(s)	187, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	143, 348
Hsp92II	CATG	3 cut(s)	64, 191, 423
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	15, 23, 42, 63, 68, 180, 211, 418
MboII	GAAGA	5 cut(s)	116, 209, 212, 224, 310
MluCI	AATT	2 cut(s)	96, 301
MnlI	CCTC	5 cut(s)	6, 100, 149, 163, 196
MseI	TTAA	2 cut(s)	18, 137
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	30, 56
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	3 cut(s)	64, 191, 423
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	18, 137
ScrFI	CCNGG	2 cut(s)	30, 56
SetI	ASST	6 cut(s)	28, 123, 174, 253, 342, 354
SfcI	CTRYAG	2 cut(s)	246, 313
Sse9I	AATT	2 cut(s)	96, 301
StyD4I	CCNGG	2 cut(s)	28, 54
TaaI	ACNGT	2 cut(s)	323, 331
TasI	AATT	2 cut(s)	96, 301
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	18, 137
Tru9I	TTAA	2 cut(s)	18, 137
TspDTI	ATGAA	2 cut(s)	350, 408
Tth111I	GACNNNGTC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.