Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Forward (+)

16037541 .. 16042544

Gene Structure 5004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1055400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGAACCTCAAGTTAGGGGTGGAGGTTGTGGCTGCCCATGACCTTATGCCCAAAGATGGGCAGGGCGCAGCCAGTGCATTTGTGGAGCTCCACTTTGATCATCAGAGATTCCAAACCACTACGAAAGAAAAAGATCTCAATCCTGTTTGGAATGAGAGCTTCTACTTCAACATTTCTGATCCAAACAACCTCTCTAACCTCAGTCTTGAAGCCTGTATTTACCACCATGGTAAAGGCAACTCCAAATCTTTCCTCGGAAAGGTTTGTCTTACTGGGACATCATTTGTTCCATATTCTGATGCTGTTGTTTTGCACTACCCTCTGGAGAAGCGAGGCCTTTTTTCACGCATTAAAGGAGAGCTTGGTCTAAAAGTTTTTGTTACTGATGACCCGTCTATAAGATCCTCAAATCCACTTCCTGCACTGGATGCGTCTCTGGACAGAGATTCACACTCTGCACATGTTCAATCACAATCACAATCACAATCACAACAAGTTCCAAATGTTAACTCAAACATGTTGTCCAATGATAAAGCTGAGTCGAGACACACATTTCATCACCTTCCAAACCCCAACCTAGCACAGCAGCAGAATATTTCTTCAGCGTCAATGCAGCCATCAGTGAACTATGGGATGCAGGAAATGAGGTCTGAACCACAGTCTTCTAAAGTTGTTCGCAGTATGTACTCAGGTTCATCAGCTCAAGCGCCTGATTATTCCCTTAAAGAGACAAGCCCTTACCTTGGAGGGGGGCGAATTGTTGGAGGGCGAGTCATACCTGGAGACAGGCCATCTGGCACCTATGACCTTGTTGAAAAGATGCAATACCTGTTTGTACGAGTTGTGAAAGCCCGTGACCTTCCTCACAAGGATATAACAGGTAGCCTTGATCCATATGTTGAAGTAAGAGTTGGTAACTACAAGGGAACTACAAGGCATTTTGAGAAAAGACAGAACCCTGAATGGAATGAGGTATTTGCTTTTGCAAAGGACAATCAGCAATCATCTGTTTTGGACGTTGTAGTCAAAGACAAGAATCTTTTGAAAGATGATTTTGTTGGGTTAGTACGGTTTGATCTCCATGAAGTTCCTCATCGAGTTCCACCAGACAGCCCATTGGCTCCAGAATGGTATCGGCTCGCAGACAAGGATGGAAGGAAGGACAAAGGAGAACTGATGCTTGCAGTATGGTTTGGCACACAAGCTGATGAGGCATTTCCAGAGGCCTGGCATTCGGATGCAATTGGTCCTGACGATGGTTCTTCGGTTGCTTATGGACACATCCGTTCAAAAGTTTACCATTCACCTAGACTATGGTATGTTCGAGTAAATGTGATTGAGGCACAGGACTTGGTTCTACACGACAGGTCCCGCTTCCCAGATGCATATGCAAAAGTACAGATTGGTAATCAGGTTTTAAAGACAAAACCAGTTCAATCTCGAGCTATGAACCCAATGTGGAACGAGGACCTGATGTTTGTTGCTGCTGAACCCTTTGACGATCATCTGATCGTTTCAGTTGAAGATCGTGTAGGTCCAAGCAAAGATGAGACCTTAGGAAGGGTAGTTATACCATTGAACGCTATTGAGAGGCGTGCAGATGATCGATTAATCCGTGGCCGGTGGTTTAACCTTGAAAAGCACATGTCAGATGCCATGGAGGGGGAGCAACGGAAGAAAGATAAAGATAAGTTTTCCAGTAGAATCCATCTCCGTGTTTGCCTTGATGGAGGGTACCATGTGCTTGATGAGTCAACTCACTACAGCAGTGACCTTCGACCCACAGCTAAGCAGCTATGGAAGTCACATATTGGTGTGTTGGAGCTCGGAATTCTAAATGCTGAAGGGTTGCACCCAATGAAAACAAGGGATGGGAAGGGTATGTCAGACACATATTGTGTAGCAAAGTATGGGCACAAATGGGTTCGTACTCGAACCATAAATAACAGCCTAAGCCCAAAATACAATGAGCAGTACACATGGGAGGTATATGATCCTGCCACAGTTCTTACTGTTGGGGTTTTTGATAACAGTCAGATTGGTAATATAAATGGCAGCAGTAGGGATTTGAAAATTGGCAAGGTCCGGATTCGAATCTCTACCCTTGAGACTGGCCGTGTCTACACACACAATTACCCATTACTAGTCCTTCATCCTTCAGGTGTCAAAAAGATGGGTGAATTGCATCTTGCAATTAGATTTACGTGCACTTCATTCGTTAACATGATGTTTAAATACTCTAAACCACTTTTGCCAAAGATGCATTATGCAAGGCCATTGACTATGATTCAGCAAGATATGTTACGTCACCAAGCTGTCAACATAGTTGCAGCTCGTCTTAGTCGGGCAGAACCACCTCTTAGGAAGGAAGTAGTTGAATACATGTCTGATGCAGACTCTCATCTTTGGAGCATGAGGCGAAGCAAGGCAAACTTTTTCAGACTGATGTCAGTTTTTTCAGGGTTGTTTGCTGTTGCAAAATGGTTCGGAGAAGTCTGCGCTTGGAAGAACCCCATCACTACCGTGCTAGTACATGTTCTTTTCGTGATGCTTGTGTGCTTCCCTGAATTGATTTTGCCAACTGTTTTCCTATACATGTTTCTGATAGGGATTTGGAACTGGAGGTACCGCCCAAGGTACCCTCCTCATATGAACACAAGGATCTCATATGCAGATGCTGTGCACCCTGACGAGCTTGATGAAGAATTTGACACATTCCCCACAACGCGGAGTTCAGATATAGTTCGAATGAGGTATGATCGCTTGAGGAGTGTTGCTGGAAGGATTCAAACTGTGGTGGGAGATGTTGCAACCCAAGGGGAGCGGCTTCAGGCACTTCTCAATTGGCGCGATCCTCGTGCCACTACTTTATATATTACCTTCTGTCTTGTGGCTTCTATTGTGTTGTATGTGACACCTTTCCAGGTTCTGGTTCTTCTTGGTGGCGTTTACCTCATGAGGCACCCGAGGTTCAGGGGTAAGATGCCATCAGCCCCGGTTAACTTCTTTAGAAGGCTGCCAGCAAGGACAGATAGTATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1015

Amino Acids

115.45

Weight (kDa)

9.07

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 92	2.7e-18	C2 domain
C2	PF00168	276 - 379	5.4e-22	C2 domain
C2	PF00168	440 - 543	1.6e-20	C2 domain
C2	PF00168	605 - 714	1.5e-20	C2 domain
PRT_C	PF08372	859 - 1014	2.7e-80	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
Acc65I	GGTACC	3 cut(s)	1734, 2625, 2637
AccB1I	GGYRCC	5 cut(s)	797, 1734, 2625, 2637, 2961
AccB7I	CCANNNNNTGG	1 cut(s)	2929
AccBSI	CCGCTC	1 cut(s)	2824
AccI	GTMKAC	1 cut(s)	2121
AccII	CGCG	2 cut(s)	2728, 2850
AccIII	TCCGGA	1 cut(s)	2085
AciI	CCGC	4 cut(s)	1372, 2629, 2728, 2824
AclWI	GGATC	6 cut(s)	173, 396, 884, 1988, 2669, 2846
AcoI	YGGCCR	2 cut(s)	1618, 2113
AcsI	RAATTY	2 cut(s)	1830, 2705
AcuI	CTGAAG	4 cut(s)	585, 1863, 2142, 2813
AflIII	ACRYGT	6 cut(s)	460, 516, 1644, 2382, 2533, 2595
AhlI	ACTAGT	1 cut(s)	2143
AjnI	CCWGG	3 cut(s)	778, 1226, 2922
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AleI	CACNNNNGTG	1 cut(s)	2522
Alw21I	GWGCWC	4 cut(s)	90, 1827, 2210, 2685
Alw26I	GTCTC	6 cut(s)	438, 538, 722, 777, 1544, 2102
Alw44I	GTGCAC	2 cut(s)	2206, 2681
AlwI	GGATC	6 cut(s)	173, 396, 884, 1988, 2669, 2846
AlwNI	CAGNNNCTG	2 cut(s)	2678, 2929
Ama87I	CYCGRG	2 cut(s)	1440, 2965
Aor13HI	TCCGGA	1 cut(s)	2085
AoxI	GGCC	6 cut(s)	334, 788, 1224, 1618, 2113, 2273
ApaLI	GTGCAC	2 cut(s)	2206, 2681
ApeKI	GCWGC	9 cut(s)	32, 68, 586, 613, 1484, 1792, 2055, 2330, 3016
ApoI	RAATTY	2 cut(s)	1830, 2705
ArsI	GACNNNNNNTTYG	4 cut(s)	506, 538, 1460, 1492
AseI	ATTAAT	1 cut(s)	1610
Asp718I	GGTACC	3 cut(s)	1734, 2625, 2637
AspLEI	GCGC	4 cut(s)	68, 709, 2501, 2850
AspS9I	GGNCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
AsuC2I	CCSGG	1 cut(s)	2996
AsuHPI	GGTGA	4 cut(s)	551, 1296, 2189, 2300
AsuII	TTCGAA	2 cut(s)	2092, 2746
AvaI	CYCGRG	2 cut(s)	1440, 2965
AvaII	GGWCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
AxyI	CCTNAGG	1 cut(s)	1555
BaeGI	GKGCMC	3 cut(s)	1917, 2210, 2685
BanI	GGYRCC	5 cut(s)	797, 1734, 2625, 2637, 2961
BanII	GRGCYC	2 cut(s)	90, 1827
BauI	CACGAG	1 cut(s)	2856
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	4 cut(s)	90, 1827, 2210, 2685
BbvI	GCAGC	9 cut(s)	19, 80, 598, 625, 1471, 1804, 2067, 2342, 3003
BceAI	ACGGC	1 cut(s)	2100
BcgI	CGANNNNNNTGC	4 cut(s)	2197, 2231, 2840, 2874
BciT130I	CCWGG	3 cut(s)	780, 1228, 2924
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	2996
BcoDI	GTCTC	6 cut(s)	438, 538, 722, 777, 1544, 2102
BcuI	ACTAGT	1 cut(s)	2143
BfaI	CTAG	4 cut(s)	578, 1308, 2144, 2528
BfmI	CTRYAG	1 cut(s)	1762
BfoI	RGCGCY	1 cut(s)	710
BglII	AGATCT	1 cut(s)	133
BlpI	GCTNAGC	1 cut(s)	1788
Bme1390I	CCNGG	4 cut(s)	780, 1228, 2924, 2996
Bme18I	GGWCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
BmeT110I	CYCGRG	2 cut(s)	1440, 2965
BmgT120I	GGNCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
BmiI	GGNNCC	7 cut(s)	799, 1122, 1370, 1736, 2627, 2639, 2963
BmrFI	CCNGG	4 cut(s)	780, 1228, 2924, 2996
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BoxI	GACNNNNGTC	1 cut(s)	2446
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	4 cut(s)	344, 801, 1107, 2641
Bpu10I	CCTNAGC	1 cut(s)	1952
Bpu1102I	GCTNAGC	1 cut(s)	1788
Bpu14I	TTCGAA	2 cut(s)	2092, 2746
BpuEI	CTTGAG	3 cut(s)	687, 2126, 2785
BpuMI	CCSGG	1 cut(s)	2996
Bsa29I	ATCGAT	1 cut(s)	1606
BsaAI	YACGTR	1 cut(s)	2205
BsaBI	GATNNNNATC	2 cut(s)	138, 2093
BsaI	GGTCTC	1 cut(s)	1544
BsaJI	CCNNGG	9 cut(s)	226, 253, 742, 1615, 1656, 2633, 2815, 2966, 2994
BsaWI	WCCGGW	1 cut(s)	2085
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bse118I	RCCGGY	1 cut(s)	1620
Bse1I	ACTGG	7 cut(s)	72, 277, 429, 1430, 1698, 2116, 2624
Bse21I	CCTNAGG	1 cut(s)	1555
Bse8I	GATNNNNATC	2 cut(s)	138, 2093
BseAI	TCCGGA	1 cut(s)	2085
BseBI	CCWGG	3 cut(s)	780, 1228, 2924
BseCI	ATCGAT	1 cut(s)	1606
BseDI	CCNNGG	9 cut(s)	226, 253, 742, 1615, 1656, 2633, 2815, 2966, 2994
BseGI	GGATG	7 cut(s)	433, 639, 1156, 1243, 1281, 1876, 2152
BseJI	GATNNNNATC	2 cut(s)	138, 2093
BseMII	CTCAG	3 cut(s)	214, 528, 702
BseNI	ACTGG	7 cut(s)	72, 277, 429, 1430, 1698, 2116, 2624
BseRI	GAGGAG	2 cut(s)	2634, 2782
BseSI	GKGCMC	3 cut(s)	1917, 2210, 2685
BseXI	GCAGC	9 cut(s)	19, 80, 598, 625, 1471, 1804, 2067, 2342, 3003
BsgI	GTGCAG	3 cut(s)	405, 441, 1617
Bsh1236I	CGCG	2 cut(s)	2728, 2850
BshFI	GGCC	6 cut(s)	336, 790, 1226, 1620, 2115, 2275
BshNI	GGYRCC	5 cut(s)	797, 1734, 2625, 2637, 2961
BshVI	ATCGAT	1 cut(s)	1606
BsiHKAI	GWGCWC	4 cut(s)	90, 1827, 2210, 2685
BsiHKCI	CYCGRG	2 cut(s)	1440, 2965
BsiSI	CCGG	3 cut(s)	1621, 2086, 2996
BslFI	GGGAC	2 cut(s)	289, 1354
BsmAI	GTCTC	6 cut(s)	438, 538, 722, 777, 1544, 2102
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	289, 1354
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	6 cut(s)	336, 790, 1226, 1620, 2115, 2275
Bso31I	GGTCTC	1 cut(s)	1544
BsoBI	CYCGRG	2 cut(s)	1440, 2965
Bsp119I	TTCGAA	2 cut(s)	2092, 2746
Bsp1286I	GDGCHC	5 cut(s)	90, 1827, 1917, 2210, 2685
Bsp13I	TCCGGA	1 cut(s)	2085
Bsp1720I	GCTNAGC	1 cut(s)	1788
Bsp19I	CCATGG	2 cut(s)	226, 1656
BspACI	CCGC	4 cut(s)	1372, 2629, 2728, 2824
BspANI	GGCC	6 cut(s)	336, 790, 1226, 1620, 2115, 2275
BspCNI	CTCAG	3 cut(s)	213, 529, 701
BspDI	ATCGAT	1 cut(s)	1606
BspEI	TCCGGA	1 cut(s)	2085
BspFNI	CGCG	2 cut(s)	2728, 2850
BspHI	TCATGA	1 cut(s)	2955
BspLI	GGNNCC	7 cut(s)	799, 1122, 1370, 1736, 2627, 2639, 2963
BspPI	GGATC	6 cut(s)	173, 396, 884, 1988, 2669, 2846
BspT104I	TTCGAA	2 cut(s)	2092, 2746
BspT107I	GGYRCC	5 cut(s)	797, 1734, 2625, 2637, 2961
BspTNI	GGTCTC	1 cut(s)	1544
BsrBI	CCGCTC	1 cut(s)	2824
BsrFI	RCCGGY	1 cut(s)	1620
BsrI	ACTGG	7 cut(s)	72, 277, 429, 1430, 1698, 2116, 2624
BssAI	RCCGGY	1 cut(s)	1620
BssECI	CCNNGG	9 cut(s)	226, 253, 742, 1615, 1656, 2633, 2815, 2966, 2994
BssSI	CACGAG	1 cut(s)	2856
BssT1I	CCWWGG	5 cut(s)	226, 742, 1656, 2633, 2815
Bst2BI	CACGAG	1 cut(s)	2856
Bst2UI	CCWGG	3 cut(s)	780, 1228, 2924
Bst4CI	ACNGT	8 cut(s)	660, 1071, 2005, 2014, 2033, 2524, 2584, 2794
BstAPI	GCANNNNNTGC	2 cut(s)	74, 428
BstBAI	YACGTR	1 cut(s)	2205
BstBI	TTCGAA	2 cut(s)	2092, 2746
BstC8I	GCNNGC	4 cut(s)	1140, 1182, 1596, 3021
BstDEI	CTNAG	8 cut(s)	200, 537, 688, 1555, 1788, 1952, 2339, 2360
BstDSI	CCRYGG	3 cut(s)	226, 1615, 1656
BstENI	CCTNNNNNAGG	2 cut(s)	257, 1558
BstF5I	GGATG	7 cut(s)	433, 639, 1156, 1243, 1281, 1876, 2152
BstFNI	CGCG	2 cut(s)	2728, 2850
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	4 cut(s)	68, 709, 2501, 2850
BstMAI	GTCTC	6 cut(s)	438, 538, 722, 777, 1544, 2102
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 428, 1211, 2260
BstNI	CCWGG	3 cut(s)	780, 1228, 2924
BstNSI	RCATGY	6 cut(s)	464, 520, 1648, 2386, 2537, 2599
BstPAI	GACNNNNGTC	1 cut(s)	2446
BstSCI	CCNGG	4 cut(s)	778, 1226, 2922, 2994
BstSFI	CTRYAG	1 cut(s)	1762
BstSLI	GKGCMC	3 cut(s)	1917, 2210, 2685
BstUI	CGCG	2 cut(s)	2728, 2850
BstV1I	GCAGC	9 cut(s)	19, 80, 598, 625, 1471, 1804, 2067, 2342, 3003
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	3 cut(s)	133, 401, 2661
BstXI	CCANNNNNNTGG	1 cut(s)	1227
BstYI	RGATCY	3 cut(s)	133, 401, 2661
Bsu15I	ATCGAT	1 cut(s)	1606
Bsu36I	CCTNAGG	1 cut(s)	1555
BsuRI	GGCC	6 cut(s)	336, 790, 1226, 1620, 2115, 2275
BsuTUI	ATCGAT	1 cut(s)	1606
BtgI	CCRYGG	3 cut(s)	226, 1615, 1656
BtsCI	GGATG	7 cut(s)	433, 639, 1156, 1243, 1281, 1876, 2152
BtsI	GCAGTG	1 cut(s)	1774
BtsIMutI	CAGTG	4 cut(s)	79, 422, 627, 1774
Cac8I	GCNNGC	4 cut(s)	1140, 1182, 1596, 3021
CaiI	CAGNNNCTG	2 cut(s)	2678, 2929
CciI	TCATGA	1 cut(s)	2955
CfoI	GCGC	4 cut(s)	68, 709, 2501, 2850
Cfr10I	RCCGGY	1 cut(s)	1620
Cfr13I	GGNCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
ClaI	ATCGAT	1 cut(s)	1606
CseI	GACGC	2 cut(s)	420, 594
DdeI	CTNAG	8 cut(s)	200, 537, 688, 1555, 1788, 1952, 2339, 2360
DraI	TTTAAA	2 cut(s)	1419, 2233
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DseDI	GACNNNNNNGTC	1 cut(s)	1022
EaeI	YGGCCR	2 cut(s)	1618, 2113
Ecl136II	GAGCTC	2 cut(s)	88, 1825
Eco130I	CCWWGG	5 cut(s)	226, 742, 1656, 2633, 2815
Eco147I	AGGCCT	2 cut(s)	336, 1226
Eco24I	GRGCYC	2 cut(s)	90, 1827
Eco31I	GGTCTC	1 cut(s)	1544
Eco47I	GGWCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
Eco53kI	GAGCTC	2 cut(s)	88, 1825
Eco57I	CTGAAG	4 cut(s)	585, 1863, 2142, 2813
Eco81I	CCTNAGG	1 cut(s)	1555
Eco88I	CYCGRG	2 cut(s)	1440, 2965
EcoICRI	GAGCTC	2 cut(s)	88, 1825
EcoNI	CCTNNNNNAGG	2 cut(s)	257, 1558
EcoO109I	RGGNCCY	2 cut(s)	1368, 1468
EcoRI	GAATTC	1 cut(s)	1830
EcoRII	CCWGG	3 cut(s)	778, 1226, 2922
EcoT14I	CCWWGG	5 cut(s)	226, 742, 1656, 2633, 2815
EcoT22I	ATGCAT	2 cut(s)	1387, 2265
EcoT38I	GRGCYC	2 cut(s)	90, 1827
ErhI	CCWWGG	5 cut(s)	226, 742, 1656, 2633, 2815
Esp3I	CGTCTC	1 cut(s)	438
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 2417, 2449
FaqI	GGGAC	2 cut(s)	289, 1354
FauI	CCCGC	1 cut(s)	1379
FauNDI	CATATG	4 cut(s)	895, 1387, 2649, 2668
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	2121
FokI	GGATG	7 cut(s)	440, 646, 1163, 1250, 1268, 1883, 2139
FriOI	GRGCYC	2 cut(s)	90, 1827
FspBI	CTAG	4 cut(s)	578, 1308, 2144, 2528
GlaI	GCGC	4 cut(s)	67, 708, 2500, 2849
GsuI	CTGGAG	4 cut(s)	344, 801, 1107, 2641
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	6 cut(s)	336, 790, 1226, 1620, 2115, 2275
HapII	CCGG	3 cut(s)	1621, 2086, 2996
HgaI	GACGC	2 cut(s)	420, 594
HhaI	GCGC	4 cut(s)	68, 709, 2501, 2850
Hin6I	GCGC	4 cut(s)	66, 707, 2499, 2848
HinP1I	GCGC	4 cut(s)	66, 707, 2499, 2848
HincII	GTYRAC	5 cut(s)	508, 1755, 2221, 2320, 3001
HindII	GTYRAC	5 cut(s)	508, 1755, 2221, 2320, 3001
HpaI	GTTAAC	3 cut(s)	508, 2221, 3001
HpaII	CCGG	3 cut(s)	1621, 2086, 2996
HphI	GGTGA	4 cut(s)	551, 1296, 2189, 2300
HpyCH4III	ACNGT	8 cut(s)	660, 1071, 2005, 2014, 2033, 2524, 2584, 2794
HpyCH4IV	ACGT	3 cut(s)	1017, 2204, 2305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 428, 1211, 2260
HpyF3I	CTNAG	8 cut(s)	200, 537, 688, 1555, 1788, 1952, 2339, 2360
HpySE526I	ACGT	3 cut(s)	1017, 2204, 2305
HspAI	GCGC	4 cut(s)	66, 707, 2499, 2848
Kpn2I	TCCGGA	1 cut(s)	2085
KpnI	GGTACC	3 cut(s)	1738, 2629, 2641
Ksp22I	TGATCA	1 cut(s)	97
KspAI	GTTAAC	3 cut(s)	508, 2221, 3001
LmnI	GCTCC	7 cut(s)	85, 93, 1126, 1666, 1822, 2409, 2821
Lsp1109I	GCAGC	9 cut(s)	19, 80, 598, 625, 1471, 1804, 2067, 2342, 3003
MaeI	CTAG	4 cut(s)	578, 1308, 2144, 2528
MaeII	ACGT	3 cut(s)	1017, 2204, 2305
MaeIII	GTNAC	8 cut(s)	379, 854, 914, 1769, 1803, 2301, 2306, 2911
MbiI	CCGCTC	1 cut(s)	2824
MboII	GAAGA	8 cut(s)	591, 654, 1254, 1535, 1687, 2518, 2714, 2927
MfeI	CAATTG	2 cut(s)	1242, 2842
MflI	RGATCY	3 cut(s)	133, 401, 2661
MhlI	GDGCHC	5 cut(s)	90, 1827, 1917, 2210, 2685
MlyI	GAGTC	4 cut(s)	548, 780, 1760, 2390
MmeI	TCCRAC	2 cut(s)	742, 1800
Mph1103I	ATGCAT	2 cut(s)	1387, 2265
MroI	TCCGGA	1 cut(s)	2085
MseI	TTAA	9 cut(s)	351, 507, 723, 1418, 1610, 1629, 2220, 2232, 3000
MslI	CAYNNNNRTG	4 cut(s)	1236, 1713, 1812, 2522
MspI	CCGG	3 cut(s)	1621, 2086, 2996
MspR9I	CCNGG	4 cut(s)	780, 1228, 2924, 2996
MunI	CAATTG	2 cut(s)	1242, 2842
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	3 cut(s)	780, 1228, 2924
MvnI	CGCG	2 cut(s)	2728, 2850
MwoI	GCNNNNNNNGC	4 cut(s)	74, 428, 1211, 2260
NciI	CCSGG	1 cut(s)	2996
NcoI	CCATGG	2 cut(s)	226, 1656
NdeI	CATATG	4 cut(s)	895, 1387, 2649, 2668
NlaIV	GGNNCC	7 cut(s)	799, 1122, 1370, 1736, 2627, 2639, 2963
NmuCI	GTSAC	5 cut(s)	854, 1769, 1803, 2306, 2911
NsiI	ATGCAT	2 cut(s)	1387, 2265
NspI	RCATGY	6 cut(s)	464, 520, 1648, 2386, 2537, 2599
NspV	TTCGAA	2 cut(s)	2092, 2746
OliI	CACNNNNGTG	1 cut(s)	2522
PaeR7I	CTCGAG	1 cut(s)	1440
PagI	TCATGA	1 cut(s)	2955
PceI	AGGCCT	2 cut(s)	336, 1226
PciI	ACATGT	6 cut(s)	460, 516, 1644, 2382, 2533, 2595
PcsI	WCGNNNNNNNCGW	1 cut(s)	1612
PctI	GAATGC	1 cut(s)	1231
PfeI	GAWTC	8 cut(s)	108, 446, 1036, 1704, 2089, 2094, 2287, 2785
PflMI	CCANNNNNTGG	1 cut(s)	2929
PleI	GAGTC	4 cut(s)	547, 779, 1759, 2390
PpsI	GAGTC	4 cut(s)	547, 779, 1759, 2390
Ppu21I	YACGTR	1 cut(s)	2205
PpuMI	RGGWCCY	2 cut(s)	1368, 1468
PscI	ACATGT	6 cut(s)	460, 516, 1644, 2382, 2533, 2595
PshAI	GACNNNNGTC	1 cut(s)	2446
PshBI	ATTAAT	1 cut(s)	1610
Psp124BI	GAGCTC	2 cut(s)	90, 1827
Psp5II	RGGWCCY	2 cut(s)	1368, 1468
Psp6I	CCWGG	3 cut(s)	778, 1226, 2922
PspGI	CCWGG	3 cut(s)	778, 1226, 2922
PspN4I	GGNNCC	7 cut(s)	799, 1122, 1370, 1736, 2627, 2639, 2963
PspPI	GGNCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
PspPPI	RGGWCCY	2 cut(s)	1368, 1468
PsrI	GAACNNNNNNTAC	2 cut(s)	2609, 2641
PstNI	CAGNNNCTG	2 cut(s)	2678, 2929
PsuI	RGATCY	3 cut(s)	133, 401, 2661
RseI	CAYNNNNRTG	4 cut(s)	1236, 1713, 1812, 2522
SacI	GAGCTC	2 cut(s)	90, 1827
SaqAI	TTAA	9 cut(s)	351, 507, 723, 1418, 1610, 1629, 2220, 2232, 3000
Sau96I	GGNCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
SchI	GAGTC	4 cut(s)	548, 780, 1760, 2390
ScrFI	CCNGG	4 cut(s)	780, 1228, 2924, 2996
SduI	GDGCHC	5 cut(s)	90, 1827, 1917, 2210, 2685
SfcI	CTRYAG	1 cut(s)	1762
Sfr274I	CTCGAG	1 cut(s)	1440
SfuI	TTCGAA	2 cut(s)	2092, 2746
SinI	GGWCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
SlaI	CTCGAG	1 cut(s)	1440
SmiMI	CAYNNNNRTG	4 cut(s)	1236, 1713, 1812, 2522
SmlI	CTYRAG	5 cut(s)	8, 702, 1440, 2105, 2764
SmoI	CTYRAG	5 cut(s)	8, 702, 1440, 2105, 2764
SpeI	ACTAGT	1 cut(s)	2143
SseBI	AGGCCT	2 cut(s)	336, 1226
SsiI	CCGC	4 cut(s)	1372, 2629, 2728, 2824
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	4 cut(s)	578, 1308, 2144, 2528
SstI	GAGCTC	2 cut(s)	90, 1827
StuI	AGGCCT	2 cut(s)	336, 1226
StyD4I	CCNGG	4 cut(s)	778, 1226, 2922, 2994
StyI	CCWWGG	5 cut(s)	226, 742, 1656, 2633, 2815
TaaI	ACNGT	8 cut(s)	660, 1071, 2005, 2014, 2033, 2524, 2584, 2794
TaiI	ACGT	3 cut(s)	1020, 2207, 2308
TaqI	TCGA	9 cut(s)	542, 1096, 1324, 1441, 1606, 1777, 1933, 2092, 2746
TatI	WGTACW	4 cut(s)	684, 1396, 1974, 2530
TauI	GCSGC	1 cut(s)	2827
TfiI	GAWTC	8 cut(s)	108, 446, 1036, 1704, 2089, 2094, 2287, 2785
Tru1I	TTAA	9 cut(s)	351, 507, 723, 1418, 1610, 1629, 2220, 2232, 3000
Tru9I	TTAA	9 cut(s)	351, 507, 723, 1418, 1610, 1629, 2220, 2232, 3000
TscAI	CASTG	4 cut(s)	79, 429, 627, 1774
TseFI	GTSAC	5 cut(s)	854, 1769, 1803, 2306, 2911
TseI	GCWGC	9 cut(s)	32, 68, 586, 613, 1484, 1792, 2055, 2330, 3016
Tsp45I	GTSAC	5 cut(s)	854, 1769, 1803, 2306, 2911
TspGWI	ACGGA	4 cut(s)	1274, 1604, 1687, 1703
TspRI	CASTG	4 cut(s)	79, 429, 627, 1774
Van91I	CCANNNNNTGG	1 cut(s)	2929
VneI	GTGCAC	2 cut(s)	2206, 2681
VpaK11BI	GGWCC	5 cut(s)	1247, 1368, 1468, 1535, 2083
VspI	ATTAAT	1 cut(s)	1610
XagI	CCTNNNNNAGG	2 cut(s)	257, 1558
XapI	RAATTY	2 cut(s)	1830, 2705
XceI	RCATGY	6 cut(s)	464, 520, 1648, 2386, 2537, 2599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	1440
XmiI	GTMKAC	1 cut(s)	2121
XspI	CTAG	4 cut(s)	578, 1308, 2144, 2528
Zsp2I	ATGCAT	2 cut(s)	1387, 2265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.