Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Reverse (-)

34681690 .. 34683259

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCACTTAAAGCGCACGTTAAGCCAACCATGTGTTCATCCATGTGATAACCCTTATATCCCTAGCTATATAATCACCTTCTTACTCCATGACATCTATCAGACTCAGAAATTCAACCTCTTTATCATTTTGACATTCCTCATTTCCCTCATCAGAAAAAAAATGGCCAAACTTTGCCTTTCTTTGCTGCTAATCCTCCTTTCCGTCTTCTCCCTTTCGAGCACGGTGGAGCCAGCCTTTTCCGGACATACTGCTCGACGTTCCAGGGCTCGAGCCAACATCGAAGCCGCATGCCGGACCACCCGCTACCCGGACCTATGCGTCCACTGCCTCACCACCTACGTCAAACCCAACATGACCATCCAAAGCCCCCAGCAACTTGCCCAAGTCGCCTTGACTGCAAGCCTCTACCGTGCCCTATATGCTAGGGCGTTCGTGCTCAAGGTAGCAAAAGAGCTGAACACACTGAAGAGGGAAAACCAAGTTGTCCGAGATTGCTTGCAGCAGATAAACGATAGCGTGGACCAACTCAGTGGATCGATCAAGGAACTACGTCGTTTGGGGCAAGAATCTGTGGGTGATGACCTGTTTTGGCACATAAGCAACGTTGAGACATGGGTTGGCACTGCTCTAACTGATGCAAACGATTGTGTAAATGCCCTTCCGGGACCAAACATGAGCAAACTGAAGGCGACTATTAAAGGAAAGATGCTCAATGTGGCTCAGACGGCTAGTAATGCACTGGCTTTGTTTCATAGTTTTGCTGCAAGGTATAAAGCTGCCAGTGCCACCAAGAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

267

Amino Acids

29.83

Weight (kDa)

9.63

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	93 - 250	3.8e-32	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	2 cut(s)	288, 304
AclI	AACGTT	1 cut(s)	606
AclWI	GGATC	1 cut(s)	544
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	488, 707
AfiI	CCNNNNNNNGG	2 cut(s)	294, 310
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	3 cut(s)	66, 457, 779
AluI	AGCT	3 cut(s)	66, 457, 779
Alw21I	GWGCWC	2 cut(s)	224, 441
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	1 cut(s)	544
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	187, 502, 764, 779
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	4 cut(s)	297, 313, 523, 668
AsuC2I	CCSGG	2 cut(s)	311, 666
AsuHPI	GGTGA	3 cut(s)	67, 325, 590
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	4 cut(s)	297, 313, 523, 668
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	271
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	224, 441
BbvI	GCAGC	4 cut(s)	174, 514, 751, 766
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	311, 666
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	4 cut(s)	63, 426, 732, 802
BisI	GCNGC	5 cut(s)	188, 288, 503, 765, 780
BlsI	GCNGC	5 cut(s)	189, 289, 504, 766, 781
Bme1390I	CCNGG	3 cut(s)	265, 311, 666
Bme18I	GGWCC	4 cut(s)	297, 313, 523, 668
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	4 cut(s)	297, 313, 523, 668
BmiI	GGNNCC	2 cut(s)	231, 669
BmrFI	CCNGG	3 cut(s)	265, 311, 666
BmsI	GCATC	2 cut(s)	628, 699
BpiI	GAAGAC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	311, 666
Bsa29I	ATCGAT	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 310
Bse1I	ACTGG	2 cut(s)	747, 783
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	37, 360
BseLI	CCNNNNNNNGG	2 cut(s)	294, 310
BseMII	CTCAG	3 cut(s)	119, 544, 737
BseNI	ACTGG	2 cut(s)	747, 783
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	4 cut(s)	174, 514, 751, 766
BseYI	CCCAGC	1 cut(s)	372
BshFI	GGCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	224, 441
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	243, 295, 311, 665
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	2 cut(s)	294, 310
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	4 cut(s)	224, 271, 418, 441
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	536, 540
BspACI	CCGC	2 cut(s)	288, 304
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	118, 543, 736
BspDI	ATCGAT	1 cut(s)	539
BspEI	TCCGGA	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	231, 669
BspPI	GGATC	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	747, 783
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	536, 540
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	226, 413
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	234, 292, 403, 500
BstDEI	CTNAG	3 cut(s)	105, 530, 723
BstF5I	GGATG	2 cut(s)	37, 360
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	539, 543
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	2 cut(s)	536, 540
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 21, 327, 389, 398, 422, 728, 737, 785
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	263, 309, 664
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	4 cut(s)	174, 514, 751, 766
BstV2I	GAAGAC	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	37, 360
BtsI	GCAGTG	2 cut(s)	325, 624
BtsIMutI	CAGTG	6 cut(s)	325, 464, 538, 624, 740, 790
Cac8I	GCNNGC	4 cut(s)	234, 292, 403, 500
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	4 cut(s)	297, 313, 523, 668
ClaI	ATCGAT	1 cut(s)	539
CseI	GACGC	1 cut(s)	310
CviAII	CATG	7 cut(s)	30, 42, 89, 291, 355, 615, 676
DdeI	CTNAG	3 cut(s)	105, 530, 723
DpnI	GATC	2 cut(s)	538, 542
DpnII	GATC	2 cut(s)	536, 540
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	4 cut(s)	297, 313, 523, 668
Eco57I	CTGAAG	2 cut(s)	488, 707
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	7 cut(s)	33, 45, 92, 294, 358, 618, 679
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	7 cut(s)	29, 41, 88, 290, 354, 614, 675
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	188, 288, 503, 765, 780
FokI	GGATG	2 cut(s)	24, 347
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	188, 288, 503, 765, 780
FspBI	CTAG	4 cut(s)	63, 426, 732, 802
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	5 cut(s)	188, 288, 503, 765, 780
GsaI	CCCAGC	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	4 cut(s)	243, 295, 311, 665
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	7 cut(s)	33, 45, 92, 294, 358, 618, 679
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	103, 569
HpaII	CCGG	4 cut(s)	243, 295, 311, 665
HphI	GGTGA	3 cut(s)	67, 325, 590
Hpy166II	GTNNAC	2 cut(s)	325, 523
Hpy188I	TCNGA	5 cut(s)	102, 108, 155, 491, 726
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	2 cut(s)	325, 523
Hpy99I	CGWCG	2 cut(s)	261, 558
HpyAV	CCTTC	3 cut(s)	88, 671, 682
HpyCH4III	ACNGT	2 cut(s)	226, 413
HpyCH4IV	ACGT	5 cut(s)	17, 259, 342, 553, 606
HpyCH4V	TGCA	6 cut(s)	4, 401, 502, 641, 740, 767
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 21, 327, 389, 398, 422, 728, 737, 785
HpyF3I	CTNAG	3 cut(s)	105, 530, 723
HpySE526I	ACGT	5 cut(s)	17, 259, 342, 553, 606
Hsp92II	CATG	7 cut(s)	33, 45, 92, 294, 358, 618, 679
HspAI	GCGC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	536, 540
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	4 cut(s)	174, 514, 751, 766
LweI	GCATC	2 cut(s)	628, 699
MaeI	CTAG	4 cut(s)	63, 426, 732, 802
MaeII	ACGT	5 cut(s)	17, 259, 342, 553, 606
MalI	GATC	2 cut(s)	538, 542
MboI	GATC	2 cut(s)	536, 540
MboII	GAAGA	2 cut(s)	199, 481
MhlI	GDGCHC	4 cut(s)	224, 271, 418, 441
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	128, 149, 158, 206, 341, 416, 465
Mox20I	TGGCCA	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	8, 20, 699
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	4 cut(s)	243, 295, 311, 665
MspR9I	CCNGG	3 cut(s)	265, 311, 666
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	9 cut(s)	10, 21, 327, 389, 398, 422, 728, 737, 785
NciI	CCSGG	2 cut(s)	311, 666
NdeII	GATC	2 cut(s)	536, 540
NlaIII	CATG	7 cut(s)	33, 45, 92, 294, 358, 618, 679
NlaIV	GGNNCC	2 cut(s)	231, 669
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	5 cut(s)	189, 289, 504, 766, 781
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp1406I	AACGTT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	231, 669
PspPI	GGNCC	4 cut(s)	297, 313, 523, 668
PspXI	VCTCGAGB	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	8, 20, 699
SatI	GCNGC	5 cut(s)	188, 288, 503, 765, 780
Sau3AI	GATC	2 cut(s)	536, 540
Sau96I	GGNCC	4 cut(s)	297, 313, 523, 668
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	3 cut(s)	265, 311, 666
SduI	GDGCHC	4 cut(s)	224, 271, 418, 441
SfaNI	GCATC	2 cut(s)	628, 699
Sfr274I	CTCGAG	1 cut(s)	270
SinI	GGWCC	4 cut(s)	297, 313, 523, 668
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	270, 440
SmoI	CTYRAG	2 cut(s)	270, 440
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	288, 304
SspMI	CTAG	4 cut(s)	63, 426, 732, 802
StyD4I	CCNGG	3 cut(s)	263, 309, 664
TaaI	ACNGT	2 cut(s)	226, 413
TaiI	ACGT	5 cut(s)	20, 262, 345, 556, 609
TaqI	TCGA	5 cut(s)	218, 256, 271, 282, 539
TasI	AATT	1 cut(s)	110
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	8, 20, 699
Tru9I	TTAA	3 cut(s)	8, 20, 699
TscAI	CASTG	6 cut(s)	332, 471, 538, 631, 747, 790
TseI	GCWGC	4 cut(s)	187, 502, 764, 779
TspDTI	ATGAA	2 cut(s)	26, 743
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	6 cut(s)	332, 471, 538, 631, 747, 790
VpaK11BI	GGWCC	4 cut(s)	297, 313, 523, 668
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	270
XspI	CTAG	4 cut(s)	63, 426, 732, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.