Rorug07G0045500

Multiple C2 and transmembrane domain-containing protein 1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
3329806 .. 3331258
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0045500.1

Sequence Viewer

Length: 987 bp
ATGCAAGAAGAACACAACCCAAGAATTGCAATGGGAAAAGCCACCAAGATTCTCAGACGATCAATCCACACTTTCCTCCAACACTACCAACACTTCACCTCAATTGTGGCACTCATAGCCTTTCCCTTCTCAGTTTCAGTCCTAATCTCCCAAGCCATTGTTCCTTCTTCTTCAACCTCATCTCTATTCCCAACCATCCACAACCGCCTCCAGAGTCTTTTTGATGCAGCAGGCTTCCCACCCTCTTCACAATTCTTCACAATTCTCACCCATAAACTCTCCCAAACAATCTCTTCCTCTATTTTCACACTACCCTTCACCCTAACCTTCCTCCTGATCACCAAAGCCTCCATAATCCAAGCCCTCAATTTCCACAAGAACCCTTCTCTCTCTTCTGCACTATCTCTCTACCCCTCAATTCTCATAACCCATCTCTGCAACTCCCTCCTAATCCTCTCAGCAAATGCCACAGTGTTTTCTCTCCTATTCATTGCCTTCAATTTTCTTGAGGGATTTGGGTTCTCTGACTCACCCAAGACCCTTCTCTTCTTATCAGCATCTGGGGCAGTTCTGTATTCTATTGTTCTTGCCAATGCTCTTATTATTTGCAACATGGCATTGGTCTTGTCAGGGACAGAGAATAGTGGGGGTTACCTAACAATTCTCAAGGCTTGTTTAGTAATCAGAGGAAGAACTTCAACTGCTCTGTTTCTGGCTCTACCTGTCTGCTTGGGATTGGCTGCAATTGAGGCATTGTTCCAATACAGGGTTGTAAGGGCTTACCATTTTGAAGGAAAGCTTGGATCTTCAATGGTTTTGGAGGGAGTTTTCATTGCTTACTTGTACTCAATTCTTGTGGTTCTTGACACAATCGTCAGCTTCAAGTTCTTCAAAAGCTGCAAGACAAGTTCTTGGGTTGAATACACTGATGAAGAAAGTGGTGGATATACCAATTTGAAGACTGCTTTGATGAAGGAAGTTTCATGA

Protein Analysis

328

Amino Acids

35.92

Weight (kDa)

9.06

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 811
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 9 cut(s) 174, 499, 699, 791, 810, 883, 892, 920, 958
AjuI GAANNNNNNNTTGG 4 cut(s) 144, 176, 783, 815
AluBI AGCT 3 cut(s) 799, 879, 897
AluI AGCT 3 cut(s) 799, 879, 897
AlwI GGATC 1 cut(s) 811
AlwNI CAGNNNCTG 1 cut(s) 560
ApeKI GCWGC 3 cut(s) 227, 740, 897
Asp700I GAANNNNTTC 1 cut(s) 694
AsuHPI GGTGA 5 cut(s) 88, 259, 310, 331, 522
BbsI GAAGAC 1 cut(s) 965
BbvI GCAGC 3 cut(s) 239, 727, 884
BccI CCATC 2 cut(s) 203, 438
BclI TGATCA 1 cut(s) 336
BisI GCNGC 3 cut(s) 228, 741, 898
BlsI GCNGC 3 cut(s) 229, 742, 899
BmsI GCATC 2 cut(s) 214, 566
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 527, 650
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse3DI GCAATG 3 cut(s) 36, 489, 831
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMI GCAATG 3 cut(s) 36, 489, 831
BseMII CTCAG 3 cut(s) 67, 144, 471
BseXI GCAGC 3 cut(s) 239, 727, 884
BsgI GTGCAG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 766
BsmFI GGGAC 1 cut(s) 646
Bsp143I GATC 3 cut(s) 59, 336, 803
BspACI CCGC 1 cut(s) 205
BspCNI CTCAG 3 cut(s) 66, 143, 470
BspHI TCATGA 1 cut(s) 983
BspPI GGATC 1 cut(s) 811
BsrDI GCAATG 3 cut(s) 36, 489, 831
BssMI GATC 3 cut(s) 59, 336, 803
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 4 cut(s) 250, 298, 397, 551
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 53, 130, 457
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 3 cut(s) 62, 339, 806
BstMBI GATC 3 cut(s) 59, 336, 803
BstMWI GCNNNNNNNGC 3 cut(s) 116, 563, 749
BstPI GGTNACC 1 cut(s) 650
BstV1I GCAGC 3 cut(s) 239, 727, 884
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 477, 924
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 1 cut(s) 983
Csp6I GTAC 1 cut(s) 844
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 2 cut(s) 613, 984
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 3 cut(s) 53, 130, 457
DpnI GATC 3 cut(s) 61, 338, 805
DpnII GATC 3 cut(s) 59, 336, 803
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
Eam1104I CTCTTC 4 cut(s) 250, 298, 397, 551
EarI CTCTTC 4 cut(s) 250, 298, 397, 551
Eco91I GGTNACC 1 cut(s) 650
EcoO65I GGTNACC 1 cut(s) 650
FaeI CATG 2 cut(s) 616, 987
FaiI YATR 7 cut(s) 116, 273, 353, 425, 614, 948, 985
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FaqI GGGAC 1 cut(s) 646
FatI CATG 2 cut(s) 612, 983
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 228, 741, 898
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 228, 741, 898
GluI GCNGC 3 cut(s) 228, 741, 898
GsuI CTGGAG 1 cut(s) 194
Hin1II CATG 2 cut(s) 616, 987
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 3 cut(s) 49, 214, 527
HphI GGTGA 5 cut(s) 88, 259, 310, 331, 522
Hpy188I TCNGA 3 cut(s) 56, 526, 686
Hpy188III TCNNGA 5 cut(s) 211, 334, 506, 863, 984
HpyAV CCTTC 9 cut(s) 136, 174, 325, 337, 393, 505, 551, 785, 967
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 8 cut(s) 4, 29, 227, 398, 438, 609, 743, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 563, 749
HpyF3I CTNAG 3 cut(s) 53, 130, 457
Hsp92II CATG 2 cut(s) 616, 987
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 3 cut(s) 59, 336, 803
LpnPI CCDG 8 cut(s) 216, 224, 347, 546, 615, 698, 735, 751
Lsp1109I GCAGC 3 cut(s) 239, 727, 884
LweI GCATC 2 cut(s) 214, 566
MaeIII GTNAC 1 cut(s) 650
MalI GATC 3 cut(s) 61, 338, 805
MboI GATC 3 cut(s) 59, 336, 803
MfeI CAATTG 2 cut(s) 102, 744
MflI RGATCY 1 cut(s) 803
MlyI GAGTC 2 cut(s) 223, 521
MmeI TCCRAC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 694
MunI CAATTG 2 cut(s) 102, 744
MwoI GCNNNNNNNGC 3 cut(s) 116, 563, 749
NdeII GATC 3 cut(s) 59, 336, 803
NlaIII CATG 2 cut(s) 616, 987
PagI TCATGA 1 cut(s) 983
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 229, 742, 899
PleI GAGTC 2 cut(s) 222, 521
PpsI GAGTC 2 cut(s) 222, 521
PspEI GGTNACC 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 1 cut(s) 803
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
SatI GCNGC 3 cut(s) 228, 741, 898
Sau3AI GATC 3 cut(s) 59, 336, 803
SchI GAGTC 2 cut(s) 223, 521
SetI ASST 8 cut(s) 101, 179, 329, 657, 724, 801, 881, 899
SfaNI GCATC 2 cut(s) 214, 566
SmlI CTYRAG 2 cut(s) 506, 665
SmoI CTYRAG 2 cut(s) 506, 665
SsiI CCGC 1 cut(s) 205
TaaI ACNGT 1 cut(s) 472
TatI WGTACW 1 cut(s) 843
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 477, 931
TseI GCWGC 3 cut(s) 227, 740, 897
TspDTI ATGAA 5 cut(s) 478, 820, 945, 972, 986
TspRI CASTG 2 cut(s) 477, 931
XmnI GAANNNNTTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.