Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Reverse (-)

15661597 .. 15664119

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGATGTCCAATGACAAATCTGAGTTGAGACGTACATTTCACCACCTTCCAAACCCCAACGTAGCACAGCAGCAGAATATTCCTTCAGCAGCAATGCAGTCGGTGAACTATGGGATGCAGGAAATGAGGTCTCAACCACAGCCTCCAGTTGTTCGCAGCATGTACCCAGGTTCATCAGCTCAAGCTCCTGATTATTCCCTTAAAGAGACAAGTCCTTACCTTGGAGGGGGGCGAATTGTTGGAGGGCGAGTCATACCTGGAGACAGGCCATCCGGCACCTATGACCTTGTTGAAAAGATGGAATACCTGTTTGTACGAGTTGTGAAAGCACGTGACCTCCCTCACATGGATATAACAGGTAGCCTTGACCCATATGTTGAAGTAAGAGTTGGGAACTACAAAGGAATTACAAGGCATTTTGAGAAAAGGCAGAACCCTGAATGGAACCAGGTATTTGCTTTTGCAAAGGATAATCTGCAATCATCTGTTTTGGACGTTGTAGTCAAAGACAAGGATCTTTTGAAAGATGACTTTGTTGGGTTTGTGCGGTTTGAGATCCATGAAGTTCCTCGTCGATTTCCACCAGACAGCCCATTGGCTCCAGAATGGTATCGGCTTGCAGATAAGGATGGGAGGAAGGACAAAGGAGAGCTGATGCTTGCTGTATGGATTGGCACACAAGCTGATGAGGCTTTTCCAGAGGCCTGGCATTCTGATGCAATTGGTCCTGATGATGGTTCTTCGGTTGCTTATGGACACATCCGTTCAAAAGTTTACCATTCACCAAGACTATGGTATGTTCGAGTAAATGTGATTGAGGCACAGGACTTGGTTCCATCTGACAGGTCCCGCTTTCCAGATGCATATGCAAAAGTACAGATCGGTAATCAGGTTTTAAAGACAAAACCAGTTCAATCTCGAGCTATGAACCCAATGTGGAACGAGGACCTGATGTTTGTTGCTGCTGAACCCTTTGACGATCATCTGGTCATTTCAGTTGAAGATCGCGTAGGTGCAAGCAAAGACGAGATCCTAGGAAGGGTTGTTATACCATTGAACACTGTTGAGAGGCGTGCTGATGATCGATTAATTCGTGGCCGGTGGTATAACCTTGAAAAGCATATGTCAGATGCCATGGAGGGGGAGCAGCGGAAGAAAGATAAAGATAAGTTTTCCAGTAGAATCCATCTCCGTGTTTGCCTTGATGGAGGGTACCACGTGCTTGATGAGTCAACTCACTACAGCAGCGACCTTCGACCTACTGCTAAGCAGCTGTGGAAGTCACATATTGGTATGTTGGAGCTCGGAATTCTAAATGCTGAAGGGCTACACCCGATGAAAACAAGGGATGGGAAGGGTGTATCAGACACATATTGTGTAGCAAAGTATGGGCACAAATGGGTTCGTACTCGAACTATAAATAACAGCGTGAGCCCAAAATACAATGAGCAGTACACTTGGGAGGTTTATGATCCTGCCACGGTTCTCACTGTGGGGGTTTTTGATAACAGTCAGATTGGTAATACAAATGGCAGCGGCAGGGATGTGAAAATTGGCAAGGTCCGGATTCGAATCTCTACCCTTGAGACTGGCCGTGTCTACACACACAATTACCCATTACTAGTCCTTCATCCTTCAGGTGTAAAAAAGATGGGTGAATTGCATCTTGCAATCAGATTTTCATGCACATCATTCGTTAACATGATGTTTAAATACTCGAAACCCCTTTTGCCAAAGATGCATTATGCAAGGCCATTGAGTGTGATGCAGCAAGATATGTTACGTCATCAAGCTGTCAACATAGTGGCAGCTCGTCTTAGTCGGGCAGAACCACCTCTCAGGAAGGAAGTAGTAGAATACATGTCGGATGCAGACTCTCATCTTTGGAGCATGAGGCGCAGCAAGGCAAACTTTTTCAGACTGATGTCAGTTTTTTCAGGGTTGTTTGCTGTTGCAAAATGGTTTGGAGAAGTCTGCAAATGGAAAAACCCCATCACAACAGTACTGGTACATGTTCTGTTCGTGATGCTCGTGTGCTTCCCAGAACTGATTTTACCGACTGTGTTCCTATACATGTTTCTGATAGGGATTTGGAACTGGCGGTACCGCCCAAGGTACCCTCCTCACATGAACACAAGAATCTCATATGCAGATGCTGTGCACCCTGACGAGCTTGATGAGGAATTTGACACATTCCCAACATCACGGGGTTCAGATATAGTTCGAATGAGGTATGACCGCTTGAGGAGTGTTGCTGGAAGAATTCAAACCGTGGTGGGTGATGTTGCAACCCAAGGGGAGAGGCTTCAGGCACTTCTCAGTTGGCGCGATCCTCGTGCCACTACTTTATACATTACTTTCTGTCTCGTGGCTGCTATTGTGTTATACGTGACCCCTTTTCAGGTCCTGGTTCTTCTCGGTGGCGTTTACCTCATGAGGCACCCGAGGTTCAGGGGTAAGATGCCATCAGCCCTGATTAACTTCTTCAGAAGGCTGCCAGCAAGAACGGATAGTATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

841

Amino Acids

96.28

Weight (kDa)

9.34

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	102 - 205	5.7e-21	C2 domain
C2	PF00168	266 - 370	3.4e-22	C2 domain
C2	PF00168	432 - 540	5.6e-20	C2 domain
PRT_C	PF08372	685 - 840	1.7e-80	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
Acc65I	GGTACC	3 cut(s)	1212, 2103, 2115
AccB1I	GGYRCC	5 cut(s)	275, 1212, 2103, 2115, 2439
AccI	GTMKAC	1 cut(s)	1599
AccII	CGCG	2 cut(s)	1008, 2328
AccIII	TCCGGA	1 cut(s)	1563
AciI	CCGC	7 cut(s)	547, 850, 1150, 1536, 2101, 2107, 2239
AclWI	GGATC	5 cut(s)	522, 550, 1024, 1466, 2324
AcoI	YGGCCR	2 cut(s)	1096, 1591
AcsI	RAATTY	3 cut(s)	1308, 2183, 2262
AcuI	CTGAAG	5 cut(s)	69, 1341, 1620, 2291, 2470
AcvI	CACGTG	2 cut(s)	332, 1219
AfiI	CCNNNNNNNGG	7 cut(s)	221, 226, 346, 734, 1039, 1140, 2401
AflIII	ACRYGT	3 cut(s)	1860, 2011, 2073
AgsI	TTSAA	9 cut(s)	293, 380, 523, 768, 914, 1001, 1057, 1115, 2267
AhlI	ACTAGT	1 cut(s)	1621
AjnI	CCWGG	5 cut(s)	166, 256, 447, 704, 2406
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
Alw21I	GWGCWC	2 cut(s)	1305, 2163
Alw26I	GTCTC	6 cut(s)	22, 135, 200, 255, 1580, 2369
Alw44I	GTGCAC	1 cut(s)	2159
AlwI	GGATC	5 cut(s)	522, 550, 1024, 1466, 2324
AlwNI	CAGNNNCTG	2 cut(s)	2156, 2407
Ama87I	CYCGRG	2 cut(s)	918, 2443
Aor13HI	TCCGGA	1 cut(s)	1563
AoxI	GGCC	5 cut(s)	266, 702, 1096, 1591, 1751
ApaLI	GTGCAC	1 cut(s)	2159
ApoI	RAATTY	3 cut(s)	1308, 2183, 2262
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AseI	ATTAAT	1 cut(s)	1088
Asp718I	GGTACC	3 cut(s)	1212, 2103, 2115
AspA2I	CCTAGG	1 cut(s)	1033
AspLEI	GCGC	2 cut(s)	1899, 2328
AspS9I	GGNCC	5 cut(s)	725, 846, 946, 1561, 2404
AsuHPI	GGTGA	5 cut(s)	32, 115, 774, 1667, 2291
AsuII	TTCGAA	2 cut(s)	1570, 2224
AvaI	CYCGRG	2 cut(s)	918, 2443
AvaII	GGWCC	5 cut(s)	725, 846, 946, 1561, 2404
AvrII	CCTAGG	1 cut(s)	1033
BaeGI	GKGCMC	2 cut(s)	1395, 2163
BanI	GGYRCC	5 cut(s)	275, 1212, 2103, 2115, 2439
BanII	GRGCYC	2 cut(s)	1305, 1436
BauI	CACGAG	3 cut(s)	2030, 2334, 2366
BbrPI	CACGTG	2 cut(s)	332, 1219
Bbv12I	GWGCWC	2 cut(s)	1305, 2163
BceAI	ACGGC	1 cut(s)	1578
BcgI	CGANNNNNNTGC	6 cut(s)	81, 115, 1675, 1709, 2318, 2352
BciT130I	CCWGG	5 cut(s)	168, 258, 449, 706, 2408
BcoDI	GTCTC	6 cut(s)	22, 135, 200, 255, 1580, 2369
BcuI	ACTAGT	1 cut(s)	1621
BfaI	CTAG	2 cut(s)	1034, 1622
BfmI	CTRYAG	1 cut(s)	1240
BlnI	CCTAGG	1 cut(s)	1033
BlpI	GCTNAGC	1 cut(s)	1266
BmcAI	AGTACT	1 cut(s)	2004
Bme1390I	CCNGG	5 cut(s)	168, 258, 449, 706, 2408
Bme18I	GGWCC	5 cut(s)	725, 846, 946, 1561, 2404
BmeT110I	CYCGRG	2 cut(s)	918, 2443
BmgT120I	GGNCC	5 cut(s)	725, 846, 946, 1561, 2404
BmiI	GGNNCC	9 cut(s)	277, 446, 600, 834, 848, 1214, 2105, 2117, 2441
BmrFI	CCNGG	5 cut(s)	168, 258, 449, 706, 2408
BoxI	GACNNNNGTC	1 cut(s)	1924
BpmI	CTGGAG	3 cut(s)	129, 279, 585
Bpu1102I	GCTNAGC	1 cut(s)	1266
Bpu14I	TTCGAA	2 cut(s)	1570, 2224
BpuEI	CTTGAG	3 cut(s)	165, 1604, 2263
Bsa29I	ATCGAT	1 cut(s)	1084
BsaAI	YACGTR	3 cut(s)	332, 1219, 2389
BsaBI	GATNNNNATC	1 cut(s)	1571
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	9 cut(s)	166, 220, 1033, 1134, 1479, 2111, 2271, 2293, 2444
BsaWI	WCCGGW	1 cut(s)	1563
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 321, 351
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 226, 346, 734, 1039, 1140, 2401
Bse118I	RCCGGY	1 cut(s)	1098
Bse1I	ACTGG	6 cut(s)	146, 908, 1176, 1594, 2010, 2102
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	1571
BseAI	TCCGGA	1 cut(s)	1563
BseBI	CCWGG	5 cut(s)	168, 258, 449, 706, 2408
BseCI	ATCGAT	1 cut(s)	1084
BseDI	CCNNGG	9 cut(s)	166, 220, 1033, 1134, 1479, 2111, 2271, 2293, 2444
BseGI	GGATG	8 cut(s)	120, 269, 634, 759, 1354, 1549, 1630, 1873
BseJI	GATNNNNATC	1 cut(s)	1571
BseLI	CCNNNNNNNGG	7 cut(s)	221, 226, 346, 734, 1039, 1140, 2401
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	12, 1852, 2332
BseNI	ACTGG	6 cut(s)	146, 908, 1176, 1594, 2010, 2102
BseRI	GAGGAG	2 cut(s)	2112, 2260
BseSI	GKGCMC	2 cut(s)	1395, 2163
Bsh1236I	CGCG	2 cut(s)	1008, 2328
BshFI	GGCC	5 cut(s)	268, 704, 1098, 1593, 1753
BshNI	GGYRCC	5 cut(s)	275, 1212, 2103, 2115, 2439
BshVI	ATCGAT	1 cut(s)	1084
BsiHKAI	GWGCWC	2 cut(s)	1305, 2163
BsiHKCI	CYCGRG	2 cut(s)	918, 2443
BsiSI	CCGG	3 cut(s)	273, 1099, 1564
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	7 cut(s)	221, 226, 346, 734, 1039, 1140, 2401
BsmAI	GTCTC	6 cut(s)	22, 135, 200, 255, 1580, 2369
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	832
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	5 cut(s)	268, 704, 1098, 1593, 1753
Bso31I	GGTCTC	1 cut(s)	135
BsoBI	CYCGRG	2 cut(s)	918, 2443
Bsp119I	TTCGAA	2 cut(s)	1570, 2224
Bsp1286I	GDGCHC	4 cut(s)	1305, 1395, 1436, 2163
Bsp13I	TCCGGA	1 cut(s)	1563
Bsp143I	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
Bsp1720I	GCTNAGC	1 cut(s)	1266
Bsp19I	CCATGG	1 cut(s)	1134
BspACI	CCGC	7 cut(s)	547, 850, 1150, 1536, 2101, 2107, 2239
BspANI	GGCC	5 cut(s)	268, 704, 1098, 1593, 1753
BspCNI	CTCAG	3 cut(s)	13, 1851, 2331
BspDI	ATCGAT	1 cut(s)	1084
BspEI	TCCGGA	1 cut(s)	1563
BspFNI	CGCG	2 cut(s)	1008, 2328
BspHI	TCATGA	1 cut(s)	2433
BspLI	GGNNCC	9 cut(s)	277, 446, 600, 834, 848, 1214, 2105, 2117, 2441
BspPI	GGATC	5 cut(s)	522, 550, 1024, 1466, 2324
BspT104I	TTCGAA	2 cut(s)	1570, 2224
BspT107I	GGYRCC	5 cut(s)	275, 1212, 2103, 2115, 2439
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	1098
BsrI	ACTGG	6 cut(s)	146, 908, 1176, 1594, 2010, 2102
BssAI	RCCGGY	1 cut(s)	1098
BssECI	CCNNGG	9 cut(s)	166, 220, 1033, 1134, 1479, 2111, 2271, 2293, 2444
BssMI	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
BssSI	CACGAG	3 cut(s)	2030, 2334, 2366
BssT1I	CCWWGG	5 cut(s)	220, 1033, 1134, 2111, 2293
Bst2BI	CACGAG	3 cut(s)	2030, 2334, 2366
Bst2UI	CCWGG	5 cut(s)	168, 258, 449, 706, 2408
Bst4CI	ACNGT	7 cut(s)	1063, 1483, 1492, 1511, 2002, 2062, 2272
BstBAI	YACGTR	3 cut(s)	332, 1219, 2389
BstBI	TTCGAA	2 cut(s)	1570, 2224
BstC8I	GCNNGC	5 cut(s)	618, 660, 1018, 1074, 2499
BstDEI	CTNAG	5 cut(s)	21, 1266, 1817, 1838, 2318
BstDSI	CCRYGG	3 cut(s)	1134, 1479, 2271
BstF5I	GGATG	8 cut(s)	120, 269, 634, 759, 1354, 1549, 1630, 1873
BstFNI	CGCG	2 cut(s)	1008, 2328
BstHHI	GCGC	2 cut(s)	1899, 2328
BstKTI	GATC	9 cut(s)	517, 558, 882, 982, 1006, 1032, 1084, 1474, 2332
BstMAI	GTCTC	6 cut(s)	22, 135, 200, 255, 1580, 2369
BstMBI	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
BstMWI	GCNNNNNNNGC	3 cut(s)	689, 1738, 1896
BstNI	CCWGG	5 cut(s)	168, 258, 449, 706, 2408
BstNSI	RCATGY	4 cut(s)	163, 1864, 2015, 2077
BstPAI	GACNNNNGTC	1 cut(s)	1924
BstSCI	CCNGG	5 cut(s)	166, 256, 447, 704, 2406
BstSFI	CTRYAG	1 cut(s)	1240
BstSLI	GKGCMC	2 cut(s)	1395, 2163
BstUI	CGCG	2 cut(s)	1008, 2328
BstX2I	RGATCY	3 cut(s)	514, 555, 1029
BstXI	CCANNNNNNTGG	2 cut(s)	705, 792
BstYI	RGATCY	3 cut(s)	514, 555, 1029
Bsu15I	ATCGAT	1 cut(s)	1084
BsuRI	GGCC	5 cut(s)	268, 704, 1098, 1593, 1753
BsuTUI	ATCGAT	1 cut(s)	1084
BtgI	CCRYGG	3 cut(s)	1134, 1479, 2271
BtsCI	GGATG	8 cut(s)	120, 269, 634, 759, 1354, 1549, 1630, 1873
BtsIMutI	CAGTG	2 cut(s)	1059, 1488
Cac8I	GCNNGC	5 cut(s)	618, 660, 1018, 1074, 2499
CaiI	CAGNNNCTG	2 cut(s)	2156, 2407
CciI	TCATGA	1 cut(s)	2433
CfoI	GCGC	2 cut(s)	1899, 2328
Cfr10I	RCCGGY	1 cut(s)	1098
Cfr13I	GGNCC	5 cut(s)	725, 846, 946, 1561, 2404
ClaI	ATCGAT	1 cut(s)	1084
CsiI	ACCWGGT	1 cut(s)	447
DdeI	CTNAG	5 cut(s)	21, 1266, 1817, 1838, 2318
DpnI	GATC	9 cut(s)	516, 557, 881, 981, 1005, 1031, 1083, 1473, 2331
DpnII	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
DraI	TTTAAA	2 cut(s)	897, 1711
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	1096, 1591
Ecl136II	GAGCTC	1 cut(s)	1303
Eco130I	CCWWGG	5 cut(s)	220, 1033, 1134, 2111, 2293
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	2 cut(s)	1305, 1436
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	5 cut(s)	725, 846, 946, 1561, 2404
Eco53kI	GAGCTC	1 cut(s)	1303
Eco57I	CTGAAG	5 cut(s)	69, 1341, 1620, 2291, 2470
Eco72I	CACGTG	2 cut(s)	332, 1219
Eco88I	CYCGRG	2 cut(s)	918, 2443
EcoICRI	GAGCTC	1 cut(s)	1303
EcoO109I	RGGNCCY	3 cut(s)	846, 946, 2404
EcoRI	GAATTC	2 cut(s)	1308, 2262
EcoRII	CCWGG	5 cut(s)	166, 256, 447, 704, 2406
EcoT14I	CCWWGG	5 cut(s)	220, 1033, 1134, 2111, 2293
EcoT22I	ATGCAT	2 cut(s)	865, 1743
EcoT38I	GRGCYC	2 cut(s)	1305, 1436
ErhI	CCWWGG	5 cut(s)	220, 1033, 1134, 2111, 2293
Esp3I	CGTCTC	1 cut(s)	22
FalI	AAGNNNNNCTT	2 cut(s)	1895, 1927
FaqI	GGGAC	1 cut(s)	832
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	4 cut(s)	373, 865, 1122, 2146
FblI	GTMKAC	1 cut(s)	1599
FokI	GGATG	8 cut(s)	127, 256, 641, 746, 1361, 1556, 1617, 1880
FriOI	GRGCYC	2 cut(s)	1305, 1436
FspBI	CTAG	2 cut(s)	1034, 1622
GlaI	GCGC	2 cut(s)	1898, 2327
GsuI	CTGGAG	3 cut(s)	129, 279, 585
HaeIII	GGCC	5 cut(s)	268, 704, 1098, 1593, 1753
HapII	CCGG	3 cut(s)	273, 1099, 1564
HhaI	GCGC	2 cut(s)	1899, 2328
Hin6I	GCGC	2 cut(s)	1897, 2326
HinP1I	GCGC	2 cut(s)	1897, 2326
HincII	GTYRAC	3 cut(s)	1233, 1699, 1798
HindII	GTYRAC	3 cut(s)	1233, 1699, 1798
HinfI	GANTC	7 cut(s)	249, 1182, 1229, 1567, 1572, 1874, 2139
HpaI	GTTAAC	1 cut(s)	1699
HpaII	CCGG	3 cut(s)	273, 1099, 1564
HphI	GGTGA	5 cut(s)	32, 115, 774, 1667, 2291
Hpy166II	GTNNAC	9 cut(s)	106, 775, 1233, 1455, 1600, 1699, 1798, 2161, 2428
Hpy8I	GTNNAC	9 cut(s)	106, 775, 1233, 1455, 1600, 1699, 1798, 2161, 2428
Hpy99I	CGWCG	1 cut(s)	576
HpyCH4III	ACNGT	7 cut(s)	1063, 1483, 1492, 1511, 2002, 2062, 2272
HpyCH4IV	ACGT	7 cut(s)	31, 60, 331, 495, 1218, 1783, 2388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	689, 1738, 1896
HpyF3I	CTNAG	5 cut(s)	21, 1266, 1817, 1838, 2318
HpySE526I	ACGT	7 cut(s)	31, 60, 331, 495, 1218, 1783, 2388
HspAI	GCGC	2 cut(s)	1897, 2326
Kpn2I	TCCGGA	1 cut(s)	1563
KpnI	GGTACC	3 cut(s)	1216, 2107, 2119
KspAI	GTTAAC	1 cut(s)	1699
Kzo9I	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
LmnI	GCTCC	5 cut(s)	190, 604, 1144, 1300, 1887
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	2 cut(s)	1034, 1622
MaeII	ACGT	7 cut(s)	31, 60, 331, 495, 1218, 1783, 2388
MaeIII	GTNAC	4 cut(s)	332, 1281, 1779, 2389
MalI	GATC	9 cut(s)	516, 557, 881, 981, 1005, 1031, 1083, 1473, 2331
MboI	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
MboII	GAAGA	6 cut(s)	732, 1013, 1165, 2271, 2405, 2476
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	3 cut(s)	514, 555, 1029
MhlI	GDGCHC	4 cut(s)	1305, 1395, 1436, 2163
MlyI	GAGTC	3 cut(s)	258, 1238, 1868
MmeI	TCCRAC	3 cut(s)	220, 1278, 1845
Mph1103I	ATGCAT	2 cut(s)	865, 1743
MroI	TCCGGA	1 cut(s)	1563
MseI	TTAA	6 cut(s)	201, 896, 1088, 1698, 1710, 2478
MslI	CAYNNNNRTG	2 cut(s)	714, 1191
MspA1I	CMGCKG	3 cut(s)	1150, 1273, 1536
MspI	CCGG	3 cut(s)	273, 1099, 1564
MspR9I	CCNGG	5 cut(s)	168, 258, 449, 706, 2408
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	5 cut(s)	168, 258, 449, 706, 2408
MvnI	CGCG	2 cut(s)	1008, 2328
MwoI	GCNNNNNNNGC	3 cut(s)	689, 1738, 1896
NcoI	CCATGG	1 cut(s)	1134
NdeI	CATATG	4 cut(s)	373, 865, 1122, 2146
NdeII	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
NlaIV	GGNNCC	9 cut(s)	277, 446, 600, 834, 848, 1214, 2105, 2117, 2441
NmuCI	GTSAC	3 cut(s)	332, 1281, 2389
NsiI	ATGCAT	2 cut(s)	865, 1743
NspI	RCATGY	4 cut(s)	163, 1864, 2015, 2077
NspV	TTCGAA	2 cut(s)	1570, 2224
PaeR7I	CTCGAG	1 cut(s)	918
PagI	TCATGA	1 cut(s)	2433
PceI	AGGCCT	1 cut(s)	704
PciI	ACATGT	3 cut(s)	1860, 2011, 2073
PcsI	WCGNNNNNNNCGW	2 cut(s)	1090, 2028
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	4 cut(s)	1182, 1567, 1572, 2139
PleI	GAGTC	3 cut(s)	257, 1237, 1868
PmaCI	CACGTG	2 cut(s)	332, 1219
PmlI	CACGTG	2 cut(s)	332, 1219
PpsI	GAGTC	3 cut(s)	257, 1237, 1868
Ppu21I	YACGTR	3 cut(s)	332, 1219, 2389
PpuMI	RGGWCCY	3 cut(s)	846, 946, 2404
PscI	ACATGT	3 cut(s)	1860, 2011, 2073
PshAI	GACNNNNGTC	1 cut(s)	1924
PshBI	ATTAAT	1 cut(s)	1088
Psp124BI	GAGCTC	1 cut(s)	1305
Psp5II	RGGWCCY	3 cut(s)	846, 946, 2404
Psp6I	CCWGG	5 cut(s)	166, 256, 447, 704, 2406
PspCI	CACGTG	2 cut(s)	332, 1219
PspGI	CCWGG	5 cut(s)	166, 256, 447, 704, 2406
PspN4I	GGNNCC	9 cut(s)	277, 446, 600, 834, 848, 1214, 2105, 2117, 2441
PspPI	GGNCC	5 cut(s)	725, 846, 946, 1561, 2404
PspPPI	RGGWCCY	3 cut(s)	846, 946, 2404
PsrI	GAACNNNNNNTAC	4 cut(s)	2037, 2069, 2087, 2119
PstNI	CAGNNNCTG	2 cut(s)	2156, 2407
PsuI	RGATCY	3 cut(s)	514, 555, 1029
PvuII	CAGCTG	1 cut(s)	1273
RseI	CAYNNNNRTG	2 cut(s)	714, 1191
SacI	GAGCTC	1 cut(s)	1305
SaqAI	TTAA	6 cut(s)	201, 896, 1088, 1698, 1710, 2478
Sau3AI	GATC	9 cut(s)	514, 555, 879, 979, 1003, 1029, 1081, 1471, 2329
Sau96I	GGNCC	5 cut(s)	725, 846, 946, 1561, 2404
ScaI	AGTACT	1 cut(s)	2004
SchI	GAGTC	3 cut(s)	258, 1238, 1868
ScrFI	CCNGG	5 cut(s)	168, 258, 449, 706, 2408
SduI	GDGCHC	4 cut(s)	1305, 1395, 1436, 2163
SexAI	ACCWGGT	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	1240
Sfr274I	CTCGAG	1 cut(s)	918
SfuI	TTCGAA	2 cut(s)	1570, 2224
SinI	GGWCC	5 cut(s)	725, 846, 946, 1561, 2404
SlaI	CTCGAG	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	714, 1191
SmlI	CTYRAG	4 cut(s)	180, 918, 1583, 2242
SmoI	CTYRAG	4 cut(s)	180, 918, 1583, 2242
SpeI	ACTAGT	1 cut(s)	1621
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	7 cut(s)	547, 850, 1150, 1536, 2101, 2107, 2239
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	1034, 1622
SstI	GAGCTC	1 cut(s)	1305
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	5 cut(s)	166, 256, 447, 704, 2406
StyI	CCWWGG	5 cut(s)	220, 1033, 1134, 2111, 2293
TaaI	ACNGT	7 cut(s)	1063, 1483, 1492, 1511, 2002, 2062, 2272
TaiI	ACGT	7 cut(s)	34, 63, 334, 498, 1221, 1786, 2391
TaqI	TCGA	9 cut(s)	574, 802, 919, 1084, 1255, 1411, 1570, 1718, 2224
TatI	WGTACW	3 cut(s)	874, 1452, 2002
TauI	GCSGC	1 cut(s)	1539
TfiI	GAWTC	4 cut(s)	1182, 1567, 1572, 2139
Tru1I	TTAA	6 cut(s)	201, 896, 1088, 1698, 1710, 2478
Tru9I	TTAA	6 cut(s)	201, 896, 1088, 1698, 1710, 2478
TscAI	CASTG	2 cut(s)	1066, 1495
TseFI	GTSAC	3 cut(s)	332, 1281, 2389
Tsp45I	GTSAC	3 cut(s)	332, 1281, 2389
TspDTI	ATGAA	7 cut(s)	162, 576, 941, 1352, 1619, 1671, 2144
TspGWI	ACGGA	3 cut(s)	752, 1181, 2522
TspRI	CASTG	2 cut(s)	1066, 1495
VneI	GTGCAC	1 cut(s)	2159
VpaK11BI	GGWCC	5 cut(s)	725, 846, 946, 1561, 2404
VspI	ATTAAT	1 cut(s)	1088
XapI	RAATTY	3 cut(s)	1308, 2183, 2262
XceI	RCATGY	4 cut(s)	163, 1864, 2015, 2077
XhoI	CTCGAG	1 cut(s)	918
XmaJI	CCTAGG	1 cut(s)	1033
XmiI	GTMKAC	1 cut(s)	1599
XspI	CTAG	2 cut(s)	1034, 1622
ZrmI	AGTACT	1 cut(s)	2004
Zsp2I	ATGCAT	2 cut(s)	865, 1743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.